BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0373.p (460 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980991|ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-... 749 0.0 gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine... 117 1e-27 >gi|152980991|ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 457 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/461 (80%), Positives = 406/461 (88%), Gaps = 6/461 (1%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLIQGFEPSQVDL 60 MHIHILG+CGTFMGGLAVLAK AGHTVTGCDANVYPPMSTQLEAQGI LI+G+ P Q+ L Sbjct: 1 MHIHILGVCGTFMGGLAVLAKAAGHTVTGCDANVYPPMSTQLEAQGIKLIEGYGPEQISL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLAVAGTHGKTTTSAM 120 PDL+VIGNVVSRGNPLMEEILNRGLPY SGPQW+GE+ILQ KWVLAVAGTHGKTTTS+M Sbjct: 61 APDLYVIGNVVSRGNPLMEEILNRGLPYTSGPQWIGEHILQGKWVLAVAGTHGKTTTSSM 120 Query: 121 LAWVLEQAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAW+LE AGY PGFLIGGVPMNFGISARL G G S FFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARL--SGSGKESSFFVIEADEYDTAFFDKRSKFV 178 Query: 181 HYRTRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGKLLVNAREAALQRVLARGC 240 HY +TAILNNLEYDHADIFPDL AIETQFHHLVRTVPG+G+++ N REA+LQRVL RGC Sbjct: 179 HYHAKTAILNNLEYDHADIFPDLHAIETQFHHLVRTVPGVGRVIANGREASLQRVLQRGC 238 Query: 241 WSGREDFGVAAGQPGWSLQTQEDGRFQVCFDGQLQGTVQWELTGEHNRMNAVAAIAAARH 300 WS E FG G+ GWSL T +DG F V F+G+LQGTVQW LTGEHNRMNA+AAIAAARH Sbjct: 239 WSESEWFG---GKEGWSLATHDDGNFDVIFNGELQGTVQWSLTGEHNRMNALAAIAAARH 295 Query: 301 VGVPTAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGV AQAI ALG F++VKRRMELRG+ +AVYDDFAHHPTAIATTV GLRKKVG ARI Sbjct: 296 VGVLPAQAIAALGQFENVKRRMELRGTVKDIAVYDDFAHHPTAIATTVEGLRKKVGKARI 355 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLAEADMVFGYGAQ-SGRDALGWDLAEALAPLGQKAAA 419 LAVLEPRSNTMKLGTMKEALPGSL +AD++FGYGA +G+DALGWDLAEALAPLG+KA + Sbjct: 356 LAVLEPRSNTMKLGTMKEALPGSLVDADLIFGYGASGNGKDALGWDLAEALAPLGEKARS 415 Query: 420 FHDLDRLVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 F+DL LVQA+ +AQ GD VLVMSNGGFGGVHQK+LDALA Sbjct: 416 FNDLPTLVQAIAQSAQAGDQVLVMSNGGFGGVHQKILDALA 456 >gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp. Marseille] Length = 465 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 197/461 (42%), Gaps = 50/461 (10%) Query: 24 GHTVTGCD--ANVYPPMSTQLEAQGITLIQGFEPSQVDLKPDLFVIGNVVSRGNPLMEEI 81 G+TV+G D +N +L A+ +TL E + K D V V NP + Sbjct: 29 GYTVSGSDLGSNAATRRLIELGAK-VTLGHAAENIE---KADAIVTSTAVKEDNPEVIAA 84 Query: 82 LNRGLPYVSGPQWMGENILQDKWVLAVAGTHGKTTTSAMLAWVLEQAGYQPGFLIGGVPM 141 + +P V + E +++ + +A+AGTHGKTTT++++A VL + G P F+IGG+ Sbjct: 85 REKHIPIVPRAVMLAE-LMRLRRGIAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGLLN 143 Query: 142 NFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFVHYRTRTAILNNLEYDHADIF- 200 + G +A+LG+ F V EADE D +F + ++ N++ DH + + Sbjct: 144 SAGANAKLGT------GEFIVAEADESDASFLNLSPVI-------EVITNIDADHMETYG 190 Query: 201 PDLAAIETQFHHLVRTVPGIGKLLVNAREAALQRVLAR-----GCWSGREDFGVAAGQPG 255 D ++ F + +P G ++ +A ++ ++ R + ED V A Sbjct: 191 HDFEKLKQAFIEFTQRLPFYGVAVLCIDDATVREIMPRISKLITTYGFHEDAQVRAIDAK 250 Query: 256 WSLQTQEDG--RFQVCFDGQLQGTVQWELTGEHNRMNAVAAIAAARHVGVPTAQAIEALG 313 DG F V +G V G HN NA AAIA AR +GV +AL Sbjct: 251 AI-----DGHMHFTVLQEGYAPMQVSLNQPGMHNVQNACAAIAIARELGVADHATQKALT 305 Query: 314 AFQSVKRRMELRGS----------ANGVAVYDDFAHHPTAIATTVAGLRKKVGAARILAV 363 F V RR G A A+ DD+ HHP A T+A R R++ Sbjct: 306 EFNGVGRRFTRYGEISLPAVNDKPAGTFALVDDYGHHPVETAATIAAARGAYPGRRLVLA 365 Query: 364 LEPRSNTMKLGTMKEALPGSLAEADM-----VFGYGAQSGRDALGWDLAEALAPLGQKAA 418 +P T + + E L+ DM V+ G Q A G LA AL G+ Sbjct: 366 FQPHRYT-RTRDLFEDFVKVLSTTDMLVLAEVYAAGEQPIVAADGRTLAHALRVAGKVDP 424 Query: 419 AF-HDLDRLVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDA 458 F + + + + GD V+ M G GV KL+ A Sbjct: 425 VFVEKIADMPATIMNIIKDGDVVITMGAGSISGVPAKLVQA 465 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,137,201 Number of extensions: 49054 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 4 Length of query: 460 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 374 Effective length of database: 903,079 Effective search space: 337751546 Effective search space used: 337751546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)