BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0371.p (551 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 452 e-128 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 424 e-120 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 406 e-114 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 405 e-114 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 395 e-111 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 452 bits (1163), Expect = e-128, Method: Compositional matrix adjust. Identities = 281/536 (52%), Positives = 358/536 (66%), Gaps = 4/536 (0%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMKVALSRVR 67 KIG +L L+F S++IL L A ++G +NDA E+ + P N MK L+++ Sbjct: 5 KIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQIA 64 Query: 68 ANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQI-SEPGEKALYPSVKERIEK 126 N L + + + I K +SL A + E+ + SE G + + +R K Sbjct: 65 RNMRNALLMTEKAAIQAELTQI-GKATDSLNNALVELEKTVRSERGRQTIAGLQADR-SK 122 Query: 127 FISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGSVQSVHIAEAT 186 F+ L D + L SAG D+A LL L+ L +DKL + +S A A Sbjct: 123 FLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANAK 182 Query: 187 YDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEISASSRDE 246 Q++ I + ++L+ + AV R I+ PL A A +VA GDLT I S+DE Sbjct: 183 ASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDE 242 Query: 247 TGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLEETASA 306 TGQL AL MNE L +IV+QVR GT+TIA+AS+QI+TGNLDLSSRTE+QASSLEETAS+ Sbjct: 243 TGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASS 302 Query: 307 MEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVDIIGVI 366 ME+LTSTV+QNAENARQ+NQLAL+AS +A GG VV +V++TMG I+ S+KKIVDIIGVI Sbjct: 303 MEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVI 362 Query: 367 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDSSVQQV 426 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI SV +V Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKV 422 Query: 427 GVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEVTQQNA 486 +GS LV AGATM +VV SV+RVTD+M+EI+AAS EQT GIEQ+N A+ QMD+VTQQNA Sbjct: 423 SIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNA 482 Query: 487 ALVEEAASASQSLSHQTRQLSELVGVFRLPGRAVQATGAALAEVAPPAPGAIAGPA 542 ALVEEAA+A++SL Q LS++VGVF+L G A AP P +AG A Sbjct: 483 ALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPTYTAPEQP-KVAGKA 537 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 275/543 (50%), Positives = 364/543 (67%), Gaps = 19/543 (3%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMKVALSRVR 67 KIG +L L+F S++ + L A +L K++ A G ++ + P + + +K L+ Sbjct: 5 KIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNET- 63 Query: 68 ANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSVKERIEKF 127 A + AL D+ + + + K ++A A + I + ++ + +F Sbjct: 64 ARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGRF 123 Query: 128 ISLHDQTLALLSAGQADQAKQLLLG---PAFQNYLALLGELDKLAQVN---LDGSVQSVH 181 + D+ +AL++ G +A+ LL PA Y+ LG LD+L + + + + H Sbjct: 124 TPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYM--LG-LDRLVEFQSNLMHKAGEDAH 180 Query: 182 IAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEISA 241 A Q GI++++ ++++ L R I+ PL A A +VA GDLT I Sbjct: 181 EVSANA-QQLVGILSVI--AVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVV 237 Query: 242 SSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLE 301 +S+DETGQL AL MN L RIV+QVR GT+TIATAS+QI+TGNLDLSSRTEEQASSLE Sbjct: 238 TSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLE 297 Query: 302 ETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVD 361 ETAS+ME+LTSTV+QNA+NARQ+NQLALTAS +A GG VV QV+ETMG+I+ S+ KIVD Sbjct: 298 ETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVD 357 Query: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDS 421 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK+LID Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDD 417 Query: 422 SVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEV 481 SV++V GS LV AG TMA+VV SV+RVTD+M EI+AAS EQT GIEQ+N A+ QMD+V Sbjct: 418 SVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQV 477 Query: 482 TQQNAALVEEAASASQSLSHQTRQLSELVGVFRLPGRAV--QATGAALAEVAPPAPGAIA 539 TQQNAALVEEAA+A++SL Q LS++V VF+L AV QAT + VA PA ++ Sbjct: 478 TQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQAT----SRVAAPASRPVS 533 Query: 540 GPA 542 PA Sbjct: 534 KPA 536 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust. Identities = 266/514 (51%), Positives = 342/514 (66%), Gaps = 13/514 (2%) Query: 8 KIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELA-TNWLPSIRSLNDMKVALSRV 66 +IG +L + F +I IL A L A+L+ + + ++ ++W+ + + + V +R Sbjct: 7 RIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKA-EAAATIDVT-TRA 64 Query: 67 RANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQISEPGEKALYPSVKERIEK 126 A L E +S + + + KN ++ A ++ I KAL KE K Sbjct: 65 NARRNMELLMETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALMQEFKEARGK 124 Query: 127 FISLHDQTLALLSAGQADQAKQLLLG---PAFQNYLALLGELDKLAQ--VNLDGSVQSVH 181 +++ + L++ D+A+Q+LL PA ++ +L + + V G+ + H Sbjct: 125 YVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEERGATAAGH 184 Query: 182 IAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLTAEISA 241 I A G +A VG G LA +I I+ PL A A VAAGDLT+ I A Sbjct: 185 IDAAIQMMMVLGALAA-VG----GIALAYWITHSITKPLHEAVKIAQTVAAGDLTSVIEA 239 Query: 242 SSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQASSLE 301 +DETGQL AL MN SL RIV +VR TE IA AS QI++GN+DLSSRTEEQASSLE Sbjct: 240 KYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLE 299 Query: 302 ETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASSKKIVD 361 ETAS+ME+LT TVRQNA+NARQANQLALTASS+A +GG VV QV++TMG+I+ S+KKI D Sbjct: 300 ETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIAD 359 Query: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKSLIDS 421 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK+LI Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGD 419 Query: 422 SVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAITQMDEV 481 SVQ+V GS LV AG+TM +VVASV+RVTD+M EI+AAS EQT GIEQ+N A+ QMD V Sbjct: 420 SVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSV 479 Query: 482 TQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 TQQNAALVE+AA+A+ SL HQ L+++VGVF+L Sbjct: 480 TQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKL 513 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 270/586 (46%), Positives = 365/586 (62%), Gaps = 55/586 (9%) Query: 1 MNWFYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMK 60 M +F + KIG +L+L F +L L+ + I QL V+ RS+ ++ Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVS-----------AITRSMLELP 49 Query: 61 VALSRVRANEAQMALYENDSGERTTIANIMNKNLNSLAA--ARKDYEEQIS-----EP-- 111 +A R+ ++ A A+ + +A + L +A A D ++ + EP Sbjct: 50 IAKERMVSDWA--AITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLL 107 Query: 112 ---GEKALYPSVKERIEKFISLHDQTLALLSAGQADQAKQLL---LGPAFQNYLALLGEL 165 EK LY + + + F++ + + L + G+ +A + PA ++ E Sbjct: 108 NTDQEKELYAKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEF 167 Query: 166 DKLAQVNLDGSVQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGA 225 +L + +D + EA + + A++ L G A + I+ PL+TA Sbjct: 168 VELERKQMDAGTAQLSDVEAASTRQLMLLSAMV---LAFGIFCAWRLTIGITRPLKTAVD 224 Query: 226 FANQVAAGDLTAEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTG 285 A +VA GDLT +I A S+DE GQL AL MN+ L+RIV +VR GTETI TASN+I+ G Sbjct: 225 AARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAG 284 Query: 286 NLDLSSRTEEQASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQV 345 NLDLSSRTE+QASSLEETAS+ME+LTSTV+QNA+NARQANQLA++AS +A +GG VV QV Sbjct: 285 NLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQV 344 Query: 346 IETMGNIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 405 ++TM +I+ SS+KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA Sbjct: 345 VQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 404 Query: 406 QRSATAAKEIKSLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQT 465 QRSA+AAKEIK+LI SV +V G+ LV +AGATM ++V S++RVTD+M EI+AAS EQ+ Sbjct: 405 QRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQS 464 Query: 466 QGIEQVNLAITQMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL-------PGR 518 GIEQ+N AI QMD VTQQNA+LVEEAA+A++S+ Q R+L ++VG F+L P R Sbjct: 465 AGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPR 524 Query: 519 AVQAT--------GAALAEVAPPAP-----GAIAGPANSDELWKTF 551 A T G+A VA P P GA+ PA + W+ F Sbjct: 525 ASGVTRLAPKPAAGSAGLAVAAPLPQRRANGAL--PAGDE--WEQF 566 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/519 (49%), Positives = 337/519 (64%), Gaps = 15/519 (2%) Query: 4 FYHRKIGTKLLLAFASILILTAFLGGFAILQLGKVNDAAGELATNWLPSIRSLNDMKVAL 63 F + KIGT+L + F +L L A L + + + + + + + L DM ++ Sbjct: 3 FSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESV 62 Query: 64 SRVRANEAQMALYENDSGERTTIANIMNKNLNSLAAARKDYEEQI----SEPG---EKAL 116 V + + L N+S I +++ AR Y+ I +P E+ L Sbjct: 63 HIVSHSMGTLVLMRNESEMVLEIKKVVD--------ARSKYDAAILVLEKKPALEVERVL 114 Query: 117 YPSVKERIEKFISLHDQTLALLSAGQADQAKQLLLGPAFQNYLALLGELDKLAQVNLDGS 176 +K ++DQ + + ++A LL+ A A LD+ Q+ + Sbjct: 115 REKIKGAQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHAN 174 Query: 177 VQSVHIAEATYDQSRFGIIALLVGSLLVGTLLAVFIARIISAPLRTAGAFANQVAAGDLT 236 A ATY+ S+ + AL +L++G ++A I R IS P+ +A AN VA GDLT Sbjct: 175 EADAVAATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIISAMNVANTVALGDLT 234 Query: 237 AEISASSRDETGQLSTALAAMNESLRRIVSQVRSGTETIATASNQISTGNLDLSSRTEEQ 296 + I ++ DE+GQL AL MN++L IV+QVR GTETIATAS +I+TGNLDLS+RTEEQ Sbjct: 235 SHIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQ 294 Query: 297 ASSLEETASAMEQLTSTVRQNAENARQANQLALTASSIAQEGGKVVHQVIETMGNIDASS 356 ASSLE+TAS+ME+LTSTV+ N +NARQAN+LAL AS A GG VV QV+ETMG I+ SS Sbjct: 295 ASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSS 354 Query: 357 KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIK 416 +KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+ AAK+I+ Sbjct: 355 RKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIR 414 Query: 417 SLIDSSVQQVGVGSTLVQQAGATMADVVASVQRVTDVMTEISAASNEQTQGIEQVNLAIT 476 LI SSVQ++ GS LV++AG TM ++V SVQ+VT +M EI+AAS EQ+ GIEQVN AI Sbjct: 415 ILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIA 474 Query: 477 QMDEVTQQNAALVEEAASASQSLSHQTRQLSELVGVFRL 515 QMD+VTQQNAALVEEAA+A+ SL Q LS++V VF+L Sbjct: 475 QMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKL 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 877,645 Number of extensions: 28139 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 21 Length of query: 551 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 463 Effective length of database: 895,685 Effective search space: 414702155 Effective search space used: 414702155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)