BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0369.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982804|ref|YP_001354658.1| hypothetical protein mma_2968 [...   244   3e-66

>gi|152982804|ref|YP_001354658.1| hypothetical protein mma_2968
           [Janthinobacterium sp. Marseille]
          Length = 224

 Score =  244 bits (623), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 144/184 (78%), Gaps = 8/184 (4%)

Query: 32  DGADYGSAKRKAAKQILGNQKVRGEIMPDNEQIEDEVRIYNELFFADTQPARLLHLRQVA 91
           DG DYG+AKRKA KQILGN KVRG I+PDN QIEDEVR+YNELFF+DTQPARLLHLRQ+A
Sbjct: 47  DGLDYGTAKRKAVKQILGNGKVRGNILPDNSQIEDEVRLYNELFFSDTQPARLLHLRQLA 106

Query: 92  LQLMQDLQQFNPYITGAVWNGTAGEHSDIHLQLFSPSAKDVEIFLLNKNVNFEVGETAHF 151
           L+LM +L  F P++TGA+ NGTAGEHSDIHLQLF+ S KDVEI+LLNK V+F+V E++HF
Sbjct: 107 LRLMAELTPFQPHLTGAILNGTAGEHSDIHLQLFAESPKDVEIYLLNKGVDFDVSESSHF 166

Query: 152 RTGH--PVETLSFLLPQRGADPELAHLTLYEEDDLRGSLRAAPGKRAERGDATALASLID 209
           + GH  PVETLSF+  Q G      HL LYE DDLRG+L+  P  R ER D  ++ +L+ 
Sbjct: 167 K-GHNEPVETLSFIWQQEG-----VHLALYETDDLRGALKKTPSGRTERADIESVRALLS 220

Query: 210 ASSE 213
             +E
Sbjct: 221 GENE 224


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 453,645
Number of extensions: 17456
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)