BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0364.p
         (304 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980437|ref|YP_001354663.1| ribosomal protein L11 methyltra...   418   e-118

>gi|152980437|ref|YP_001354663.1| ribosomal protein L11
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 310

 Score =  418 bits (1074), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/304 (72%), Positives = 251/304 (82%), Gaps = 3/304 (0%)

Query: 1   MAWVEIVIEVAREEAEALSDALMDSGALSVSVEDADEGTEAERPLFGEPGMEPEEAAWDR 60
           M+W EIVIEVAR  AEALSDALM++GALSVSVEDAD GT+AE+PLFGEPGMEP EAAW+ 
Sbjct: 1   MSWTEIVIEVARTHAEALSDALMEAGALSVSVEDADFGTDAEQPLFGEPGMEPTEAAWEH 60

Query: 61  SRVVALAGKDADHAAIVMDAAKAIGLDYA-LPFATRNVEEQDWVRLTQSQFEPIHIGQRI 119
           SRVVAL   +AD AAIV +AA+A+GL    + F  R VEEQDWVRLTQSQFEPIHIG+ I
Sbjct: 61  SRVVALTPVEADQAAIVAEAAQAVGLAATDVAFTLRAVEEQDWVRLTQSQFEPIHIGKNI 120

Query: 120 WVVPSWHEAPADPDALVLELDPGLAFGTGSHPTTRLCMEWLEANATQAQTLLDYGCGSGI 179
           WVVPSWH+AP DP ALVLELDPGLAFGTGSHPTTRLCMEWLEA+     ++LDYGCGSGI
Sbjct: 121 WVVPSWHDAP-DPQALVLELDPGLAFGTGSHPTTRLCMEWLEAHPPVGLSVLDYGCGSGI 179

Query: 180 LALVAAKIGVPQVIGVDIDPQALESAQHNTERNHCTATYYLPEAFAQAHPEGERFNVVVA 239
           LA+VAAK+G   VIG+DIDPQA++SA  NTERNHC   YYLP+ FA +      F+VVVA
Sbjct: 180 LAMVAAKLGSTDVIGIDIDPQAIKSALFNTERNHCEVAYYLPDEFASSG-HAHTFDVVVA 238

Query: 240 NILAGPLQLMAPMLAGRVRAGGALVLSGVLDRQAQEVIATYAPYIALTVWAEHEGWVALA 299
           NILA PL++MAPML+GRV+ GG L+LSGVL  Q +EV A YAP+I L+VWAEHEGWVALA
Sbjct: 239 NILANPLKVMAPMLSGRVKPGGKLILSGVLATQVEEVSAAYAPFIKLSVWAEHEGWVALA 298

Query: 300 GHLP 303
           G LP
Sbjct: 299 GQLP 302


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 761,539
Number of extensions: 33248
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 221
Effective length of database: 914,170
Effective search space: 202031570
Effective search space used: 202031570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)