BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0363.p
         (422 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982692|ref|YP_001354664.1| hypothetical protein mma_2974 [...   231   8e-62

>gi|152982692|ref|YP_001354664.1| hypothetical protein mma_2974
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  231 bits (588), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 157/432 (36%), Positives = 224/432 (51%), Gaps = 52/432 (12%)

Query: 1   MALATQCPHCLTIFRVASDQLKLRGGLVRCGSCREVFNGNEFLVEASIADGHYQPAPGS- 59
           MALATQCPHC T FRVA DQLKLR GLVRCG C+E+FNG E L+ +          P + 
Sbjct: 24  MALATQCPHCQTTFRVAHDQLKLRAGLVRCGYCKEIFNGIENLLPSEDPASAAPAVPATT 83

Query: 60  -------KAQAGVARPAMRAAAAAAAAPAPAPASAPAASVPRAAPVASAPVLPDVRSQAA 112
                  + QA    P +   A   +APA A ++             S P  PD  + A 
Sbjct: 84  NAETTEVQVQAAAVAPEIEQDANEDSAPAIADSNE------------STPDEPDETASAD 131

Query: 113 VPEVNAPAPVAAKPAPVAPAIPVIAEPKVFRSPSSPGYIPDLGASLKPAEPVDKNKWDDD 172
             E  A AP A+K   +   IP   E        +  Y+PD      PA   +K     +
Sbjct: 132 TEEPVAEAPAASK---IDFDIPAGFER------DADVYVPD------PAYEANK----PE 172

Query: 173 DPAAPPTLATSPDDAPDS-GALLRRSSAEPEDVLAPPDVAAVFRIDDEPVLHEPPLRRQE 231
           DP    TL     D PD   A    S+ +P ++    D A    I+D   L   P RR  
Sbjct: 173 DPLQRMTLLDFTRDLPDEINAENTASTYDPNEL----DQA----IND---LQRKPWRRSR 221

Query: 232 APAEE-SEEKFEDSDEAEEPGFVRRAQRKARISHMTKMVMMVLAGAMVPVLLLQSLYYWR 290
             A+  +++  ++ D  +EP F++R +RK R+S   ++ + +    ++   LLQ +Y +R
Sbjct: 222 KSAQAATQDALDEVDADDEPDFLKRGRRKQRLSRKLRIFLGISCFILLIAALLQGIYVFR 281

Query: 291 NPLAAAVPQLRPMLNGMCVSLHCTVGLPTEIERLSLEANELQVVPPSQNVYALTVVMRNR 350
           N +A   PQ +P+L   C  L C + LP +I+++S+E++ELQ +  +++ + LT ++RN 
Sbjct: 282 NQIAGWFPQAKPILIQTCELLGCRIDLPAQIDQVSIESSELQTLANNKDTFVLTTLLRNY 341

Query: 351 SSTTQAWPDIELTLNNDDEKAVVRRVFRPRDYLADPTQADNGIGPESEQQIKLNFELKDA 410
           SST Q WP IELTLN+ +EK ++RRVF P DYL +      G    SE+ +KL+FEL   
Sbjct: 342 SSTYQEWPHIELTLNDINEKPLLRRVFTPDDYLHNSEDVRIGFSANSERSVKLSFELTQL 401

Query: 411 LVSGYRVYLFYP 422
             SGYRVYLFYP
Sbjct: 402 KASGYRVYLFYP 413


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 695,037
Number of extensions: 21675
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 336
Effective length of database: 903,079
Effective search space: 303434544
Effective search space used: 303434544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)