BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0360.p
         (183 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982148|ref|YP_001354666.1| hypothetical protein mma_2976 [...   205   1e-54

>gi|152982148|ref|YP_001354666.1| hypothetical protein mma_2976
           [Janthinobacterium sp. Marseille]
          Length = 180

 Score =  205 bits (521), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 136/175 (77%), Gaps = 1/175 (0%)

Query: 8   SIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GSY 66
           S+FT+I++ VA +LAG +LLRFWMQ VRVRPP  + QF YQL+DWLVRPLRRV+PG G Y
Sbjct: 4   SVFTLIIDTVAIVLAGALLLRFWMQAVRVRPPMELAQFTYQLTDWLVRPLRRVLPGAGGY 63

Query: 67  DWASLVAAFLIVLLSIIAILGWQSGFDFRLIFIVALERFFEWICYGFMATLIIEAVFSWV 126
           DWAS++ AFL+ L +    L  + GF  + + +++L R  +W  YG +  ++IE +FSWV
Sbjct: 64  DWASVIGAFLVALAATAVDLLLRGGFSAQTLLLLSLLRVVQWALYGLIGLILIEVIFSWV 123

Query: 127 NPHAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPLVLLILLQIAVRVVSGLLFA 181
           NP APLAPFVRALNDPL+RPLRR++P +G VDLSPLV LILL+IA+++V+ L+ A
Sbjct: 124 NPRAPLAPFVRALNDPLMRPLRRVVPLIGTVDLSPLVALILLRIAIQLVTTLVAA 178


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.335    0.148    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 363,583
Number of extensions: 13370
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 105
Effective length of database: 932,655
Effective search space: 97928775
Effective search space used: 97928775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)