BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0358.p
         (388 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate redu...   700   0.0  

>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate
           reductase subunit beta [Janthinobacterium sp. Marseille]
          Length = 392

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/392 (86%), Positives = 361/392 (92%), Gaps = 4/392 (1%)

Query: 1   MLSWDDEVKQPAQAPRTPNLQPQLQPAFGQ----ANAALNPALMAGNGEQVDTTRRVNAA 56
           MLSWD+EVK  A AP       Q++ A  Q     + AL+PAL+A +   VD TRR++AA
Sbjct: 1   MLSWDEEVKPAAPAPALQPALQQVRDAAAQRLQTQDVALDPALVAKDAAAVDPTRRMDAA 60

Query: 57  DKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTEDERR 116
           DKR+ING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLT+DERR
Sbjct: 61  DKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTDDERR 120

Query: 117 LVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 176
           LVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL
Sbjct: 121 LVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 180

Query: 177 DEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIMEGLF 236
           DE EIFNAY+EV SIRDKD+FLIPFI+TLTDPEFKTGT ENDQKLL+SLIVFAC+MEGLF
Sbjct: 181 DEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFACLMEGLF 240

Query: 237 FYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPEFREE 296
           FYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHLWTP+FREE
Sbjct: 241 FYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLWTPQFREE 300

Query: 297 IKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQEENPF 356
           IK+LFLRAVELEYRYAEDTMPRGVLGLNAPMFK YLRFIANRRAQQIGL+P+F QEENPF
Sbjct: 301 IKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFEQEENPF 360

Query: 357 PWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388
           PWMSEMIDLKKERNFFETRVIEYQTGGAL+WE
Sbjct: 361 PWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 908,927
Number of extensions: 36929
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 303
Effective length of database: 906,776
Effective search space: 274753128
Effective search space used: 274753128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)