BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0357.p
         (993 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate redu...  1734   0.0  

>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate
           reductase subunit alpha [Janthinobacterium sp.
           Marseille]
          Length = 963

 Score = 1734 bits (4492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/991 (84%), Positives = 886/991 (89%), Gaps = 30/991 (3%)

Query: 3   STQEISVKSPAPFGVSAEQEGSAEGQSIVSHTAGLGEYRIIRRNGAVVGFEPSKISIAVT 62
           STQEIS KSP   G  A    +    +  + T GLGE+RIIRRNGAVVGFEPSKISIAVT
Sbjct: 3   STQEISAKSPTEIGNIASLAVAPSTSN--TQTVGLGEHRIIRRNGAVVGFEPSKISIAVT 60

Query: 63  KAFLAVNGGQGAASARVREMVEQLTTSVVSALVRRQPTGGTFHIEDIQDQVELALMRSGE 122
           KAFLAVNGGQGAASARVRE+VEQLT++VV+ALVRRQP GGTFHIEDIQDQVELALMRSGE
Sbjct: 61  KAFLAVNGGQGAASARVRELVEQLTSNVVNALVRRQPAGGTFHIEDIQDQVELALMRSGE 120

Query: 123 HDVARAYVLYRAKRMEERAQQGAATKTEVAAPQLHVTEDGQSRPLDINEVRALIAAACVG 182
           HDVARAYVLYRAKRMEERAQQ AA K      QLHVTEDGQ RPLD+N+VR LI AAC+G
Sbjct: 121 HDVARAYVLYRAKRMEERAQQQAA-KPVAETHQLHVTEDGQRRPLDMNQVRDLINAACIG 179

Query: 183 LEAHVDAEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIRKE 242
           LE HVDAEAIL ETVKNLYDGVPVEEL+KSAILAARALMEKDPAYS VT+RLLMHTIRKE
Sbjct: 180 LEKHVDAEAILHETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKE 239

Query: 243 VFGKEVAQADAPAEYLDYFPHYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGYIG 302
           VFG EVAQADAPA+YL+YFP ++KKGIEAELLD KL QFDL KL  AL PERDLQFGY+G
Sbjct: 240 VFGLEVAQADAPAQYLEYFPKFIKKGIEAELLDAKLGQFDLKKLGDALVPERDLQFGYLG 299

Query: 303 LQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYDLLSSFDFMSSTPT 362
           LQTLYDRYFLHI  TRIEMPQAFYMRVAMGLALNEI+RE RAIEFY+LLSSFDFMSSTPT
Sbjct: 300 LQTLYDRYFLHIRDTRIEMPQAFYMRVAMGLALNEINREERAIEFYNLLSSFDFMSSTPT 359

Query: 363 LFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIKGT 422
           LFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAK+AGGLGNDWTPVR+LGAHIKGT
Sbjct: 360 LFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGAHIKGT 419

Query: 423 NGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTH 482
           NG+SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFL+LRKNTGDDRRRTH
Sbjct: 420 NGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTH 479

Query: 483 DMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLF 542
           DMNTANWIPDLFMKRVMEKGEWTLFSPSD PDLHDK G+AFE AYT YEAKAARGELKLF
Sbjct: 480 DMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEAAYTGYEAKAARGELKLF 539

Query: 543 KKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEI 602
           KK+QA DLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEI
Sbjct: 540 KKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEI 599

Query: 603 AVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG 662
           AVCNLGSVN+PAH+ +G+LDH KLQKT+RTAMRMLDNVIDINYYAVKKARDSNLRHRPVG
Sbjct: 600 AVCNLGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG 659

Query: 663 MGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWD 722
           +GIMGFQDCLH+ R+PYAS +AV+FADRSMEAVCYYAY ASTELAEERGRY+SYRGSLWD
Sbjct: 660 LGIMGFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWD 719

Query: 723 RGILPQDSLKLLAQERGGYLETDTTETLDWAALRARIAEHGMRNSNCVAIAPTATISNII 782
           RGILPQDSLKLL +ERGGYLE D TETLDW  LR RI + GMRNSNCVAIAPTATISNII
Sbjct: 720 RGILPQDSLKLLQEERGGYLEADLTETLDWTPLRERIKQFGMRNSNCVAIAPTATISNII 779

Query: 783 GVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKIDR 842
           GVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVM++DLKYFDGSLAKIDR
Sbjct: 780 GVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDR 839

Query: 843 IPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRG 902
           IPQDLRDIY+TAFEV+P WLVEAASRRQKWIDQAQSLNIYMAGASGK+LD+TYKLAWLRG
Sbjct: 840 IPQDLRDIYSTAFEVEPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRG 899

Query: 903 LKTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGTAVPAAPIASAAASAAYV 962
           LKTTYYLRT+GATHTEKSTS+ GALNAV                            +   
Sbjct: 900 LKTTYYLRTMGATHTEKSTSKTGALNAV---------------------------DSGAP 932

Query: 963 MPNPGASIEADGPVCTMRPGDPGFEECEACQ 993
                A+ E DGP C +RPGD GFEECEACQ
Sbjct: 933 SSAAQAAAETDGPACMLRPGDAGFEECEACQ 963


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,173,098
Number of extensions: 87250
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 1
Length of query: 993
Length of database: 1,221,021
Length adjustment: 93
Effective length of query: 900
Effective length of database: 877,200
Effective search space: 789480000
Effective search space used: 789480000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)