BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0354.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981551|ref|YP_001354674.1| ABC-type transport system, perm...   385   e-108
gi|152981762|ref|YP_001355064.1| cytochrome c assembly family pr...    62   3e-11

>gi|152981551|ref|YP_001354674.1| ABC-type transport system,
           permease component [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/269 (71%), Positives = 224/269 (83%), Gaps = 1/269 (0%)

Query: 1   MQTYFFILAALFYLGCAFMPSQRRAPISLGIVVGWVLHGGALLSDMFAPDALRVGFAVML 60
           M TYFF+LAALFY  CAF+P+++R  IS G ++GW+LHG AL  D+    ALR+GFA+ML
Sbjct: 1   MYTYFFVLAALFYAACAFLPAKQRTAISTGTLIGWLLHGAALWVDVIGHGALRMGFAIML 60

Query: 61  SSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVILPTVFPGNLVALAGKSDWFLAHIA 120
           S  LWISVA YWLENRNFSLD +R+LVLP AA+ V+LPTVFPG+++ L GKS  F  HIA
Sbjct: 61  SGALWISVAVYWLENRNFSLDGLRILVLPCAAVGVLLPTVFPGSMIPLDGKSALFPWHIA 120

Query: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQSSWFGLALDRLPALLTMEKLLFRLI 180
           I++LAYSTLTIAAFHAVLM LQES+LHTR   V ++ WF LA+DRLPALLTMEKLLFRLI
Sbjct: 121 IAMLAYSTLTIAAFHAVLMALQESKLHTRL-SVQKTGWFALAIDRLPALLTMEKLLFRLI 179

Query: 181 AFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGRTAL 240
             GF LLTLTVLSGVVFSE+LFG   KW+HKTIFTMLSW+LFG+LLAGRRW+GWRG+TAL
Sbjct: 180 GIGFFLLTLTVLSGVVFSEELFGKAFKWEHKTIFTMLSWILFGVLLAGRRWRGWRGKTAL 239

Query: 241 SFTLAGFAILLLAYVGSRFVLEVVLHRVL 269
           SFTL GF  L LAYVGSRFV EV+LHR L
Sbjct: 240 SFTLTGFTTLFLAYVGSRFVFEVILHRSL 268


>gi|152981762|ref|YP_001355064.1| cytochrome c assembly family
           protein [Janthinobacterium sp. Marseille]
          Length = 383

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 111 KSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQSSWFGLALDRLPALL 170
           +S W   H+  + + Y T  +AA  A+  +L+                 G+ +DRLPAL 
Sbjct: 239 QSWWMKIHVPANFIGYGTFALAAMVAIAYLLKSH---------------GMLVDRLPALE 283

Query: 171 TMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRR 230
            ++ ++++ IA GF   T+  + G +++ + +G    WD K  + ++ WL +   L  R 
Sbjct: 284 VLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYASWLHMRL 343

Query: 231 WQGWRGRTALSFTLAGFAILLLAYVGSRFVLE 262
            +G RG+ A  + + G  +   A++G    L 
Sbjct: 344 MKGLRGKIAAWWAVIGLLVTTFAFLGVNMFLS 375


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 538,614
Number of extensions: 17956
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)