BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0353.p (269 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 260 6e-71 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 219 2e-58 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 202 1e-53 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 195 3e-51 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 194 4e-51 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 260 bits (664), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 127/258 (49%), Positives = 175/258 (67%), Gaps = 4/258 (1%) Query: 8 PRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 P I I+ V KVF + V AL+++NL I G+FVCL+G SGCGKSTLL +AGF SS Sbjct: 12 PAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSS 71 Query: 68 GQILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDK 127 G G + P P+RGMVFQ+Y LFPW+TV++N+ FG + PKA++ + + D Sbjct: 72 GSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDM 131 Query: 128 LGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIW 187 +GL F +P LSGGM+QRVAIARVLA D ++LMDEPFGALDALTR LQ +LL IW Sbjct: 132 VGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIW 191 Query: 188 DEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFNALKREL 247 + + T+VFVTH++EEA+ L+DR+VVMT PG ++ D+ ++L R RD +FN ++R++ Sbjct: 192 ERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVEFNEIRRDI 251 Query: 248 GQLVMEEQQRHHNAEMKA 265 Q + H +A++ A Sbjct: 252 TQYLTS----HVSAKVAA 265 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 219 bits (557), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/254 (46%), Positives = 161/254 (63%), Gaps = 6/254 (2%) Query: 6 SSPRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 S+P + + V ++T ER V A ++ + LLGPSGCGKSTLL A+AGF LP Sbjct: 36 SAPLLQVDDVSLEYRTRERVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILP 95 Query: 66 SSGQILTDGKAVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGL---EIKGRPKAEIAQRV 121 G+I DGKAVT PGPDR +VFQE+ L PW TV+QNV F L GR +AE +R Sbjct: 96 VEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAE--ERA 153 Query: 122 SQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQD 181 L K+GL F P LSGGM+QRVAIAR LA+ ++LMDEPF ALDALTRR +Q+ Sbjct: 154 LHYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQE 213 Query: 182 ELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFN 241 ELL++WDE T++FVTHSIEEA+ + +RI +++ PG ++ ++ + L +F Sbjct: 214 ELLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRAEINSHDFSLASLGSTEFQ 273 Query: 242 ALKRELGQLVMEEQ 255 + + ++ EE+ Sbjct: 274 NTAQRIHHMLFEEE 287 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 154/246 (62%), Gaps = 4/246 (1%) Query: 10 ICIQSVHKVFKT-DEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 I ++ V K F+T D L+ ++ + +G+ V LLG SG GKSTLL +AG SG Sbjct: 7 IELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSG 66 Query: 69 QILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKL 128 + GK + P MVFQ +ALFPW+TV+QNV GLE +G P AE +R +LD + Sbjct: 67 SAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLDLI 126 Query: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 GL F P++LSGGM+QRV IAR L ++LMDE F ALD LT L+D++L +W+ Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 189 EFR---KTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFNALKR 245 E R K I+ V+H+IEEA+ ++DRIVV++ PG ++ ++ ++LPR R+P + AL Sbjct: 187 ENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRNPDSAEVRALID 246 Query: 246 ELGQLV 251 E+ L+ Sbjct: 247 EVYALM 252 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 195 bits (495), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 153/262 (58%), Gaps = 8/262 (3%) Query: 4 SNSSPRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFA 63 S +S I IQ F T + AL ++NL + G+F+ L+G SGCGKSTLLN IAG Sbjct: 3 SINSKFIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLT 62 Query: 64 LPSSGQILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLE---IKGRPKAEIAQR 120 + G +L + + P P+R +VFQ ++L PW+T +NV +E KAE+ R Sbjct: 63 QATGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKAR 122 Query: 121 VSQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQ 180 L +GL + P ++SGGM+QRV IAR L+++ ++LMDEPFGALDALTR +LQ Sbjct: 123 TRAALALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQ 182 Query: 181 DELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRP-GTVKRDMLVNLPRLRD----P 235 DELL+I T+V VTH ++EA+ L+DRIV++T P T+ + V L R R+ Sbjct: 183 DELLKIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEVKLARPRERVMLA 242 Query: 236 ADPDFNALKRELGQLVMEEQQR 257 DP ++ + + + + Q Sbjct: 243 QDPLYSQYRTAVLEFLYHRQSH 264 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/213 (48%), Positives = 137/213 (64%), Gaps = 3/213 (1%) Query: 29 LKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDGKAVTEPGPDR-GMV 87 ++D++L I G+FV ++G SG GKSTLL A AG PSSG + K PG R +V Sbjct: 22 IQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQL--KLPQLPGRRRRAVV 79 Query: 88 FQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKLGLIDFRTRFPKDLSGGMRQ 147 FQ+ L PW TV NVA+GLE G E R+ Q L GL +F R+P LSGG Q Sbjct: 80 FQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSGGQVQ 139 Query: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 RV IAR LA+ ++LMDEPF A+DALTRRNLQ EL+RIW + ++FVTH I+EA++L Sbjct: 140 RVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEAVFL 199 Query: 208 ADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDF 240 ADR++V+ P TV ++ ++LPR R +D F Sbjct: 200 ADRVIVLGGSPATVVENLRIDLPRPRVRSDVAF 232 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 628,245 Number of extensions: 26057 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 61 Length of query: 269 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 187 Effective length of database: 917,867 Effective search space: 171641129 Effective search space used: 171641129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)