BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0352.p (273 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 166 2e-42 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 166 2e-42 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 136 1e-33 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 104 6e-24 gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate tran... 89 4e-19 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 166 bits (420), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/262 (39%), Positives = 155/262 (59%), Gaps = 21/262 (8%) Query: 14 LVPIIVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYDPEAGSWLAW--AFSG 71 +VP+++I++W+ AS+ GW++ +ILP P+AV K AW A SG Sbjct: 34 IVPVLLISVWQIASQLGWLSSRILPEPFAVAKA-------------------AWELALSG 74 Query: 72 ELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLA 131 EL SL+R F +G GL L LGLL G+ + L++ T+Q+IR IP +A IPL Sbjct: 75 ELWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLV 134 Query: 132 ILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPA 191 ILWFG+ +FL+++G FFPV +NT G+R VD + A++ G S +L+ V+LP Sbjct: 135 ILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPG 194 Query: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 A+P IL GVR +G ++++IVAE I+ +G+G+ M ARE+ +D ++ G++ LLG Sbjct: 195 ALPSILVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLVGILLYALLGK 254 Query: 252 AIDLGMSRLNNYMLRWHRGLEN 273 D+ L Y LRWH G + Sbjct: 255 LADVVSRTLEGYWLRWHPGYRH 276 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 140/211 (66%) Query: 57 YDPEAGSWLAWAFSGELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTV 116 YD G AFS L + S+ RV GF A + +PLGLL+G + I L++ T+ Sbjct: 60 YDFAFGGIYDDAFSETLPLHLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTL 119 Query: 117 QVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNL 176 Q++RP+P A++PL++++FG+G A+FL+ LGAF+P++ NT GV+ VD+ AA L Sbjct: 120 QLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALML 179 Query: 177 GASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWS 236 G + S+LF +V+LPAA+P IL+G+R+G G A+I+++V EM V GLG IM+ R + Sbjct: 180 GCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILIVVGEMTGVPEGLGAVIMDGRMLSRT 239 Query: 237 DKIIAGMITIGLLGLAIDLGMSRLNNYMLRW 267 D +IAGM+ IG++G + D + +NNY+L+W Sbjct: 240 DLVIAGMVVIGIVGYSTDRILVAINNYLLKW 270 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 144/273 (52%), Gaps = 19/273 (6%) Query: 1 MAKQNKGSFLQGLLVPIIVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYDPE 60 +AK K +L G ++P+ V+ E A++ GWI ++LP P +++ Sbjct: 40 VAKARKLGWL-GWILPLAVLGFVEVAAQLGWIQARLLPPPSEIVQT-------------- 84 Query: 61 AGSWLAWAFSGELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIR 120 L+ L++ S+ RV +G+ IGA LA+ GL +G S+ T Q +R Sbjct: 85 ----LSALLEQGLLVHISASVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALR 140 Query: 121 PIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ 180 IP +A++PL +LWFG+ P + LI++GAFFP+ + ++G+R VD + G S Sbjct: 141 AIPSLAWVPLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSA 200 Query: 181 STLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKII 240 L R++LPAA+P + +G+R G+ A++ ++ AE+IA + G+G+ + + RE D ++ Sbjct: 201 PALARRIVLPAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIGYLLTDGRETSRPDVVL 260 Query: 241 AGMITIGLLGLAIDLGMSRLNNYMLRWHRGLEN 273 A + + +LG D + L L W L Sbjct: 261 AAIFLLAILGKLTDGLLKWLETRKLAWSDSLAT 293 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 99/150 (66%) Query: 76 DAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 + + SL RV GF + A + +PLG ++G + + G+ N + +++P+ P+A++P+ +L F Sbjct: 114 NILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVF 173 Query: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 +P A++ I + + +P+++NT GV++V Y+ A+ L S+ + +++ P+ +PY Sbjct: 174 KAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPY 233 Query: 196 ILSGVRIGIGTAFIVVIVAEMIAVSNGLGF 225 +L+GVR+ IGTA++V++ AEM+ G+GF Sbjct: 234 MLTGVRLAIGTAWLVIVAAEMLTGGVGIGF 263 >gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 294 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 30 GWINPQI----LPSPWAVLKKWVEYATPLKPYDPEAGSWLAWAFSGELIMDAIGSLYRVV 85 GW+ + L W V+ +W + L + A + + SGEL+ SL ++ Sbjct: 43 GWLRKSVILVVLAVIWEVVARWQDNELLLPTFIATAQALVEGISSGELLAKVGISLSVLL 102 Query: 86 AGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFL 145 G+ IG A L L S+Q L++ ++ P+P IA +PLA+LWFG+G +F+ Sbjct: 103 QGYAIGVLAAFILTTLAVSTQLGRDLLDTLTSMLNPLPAIALLPLALLWFGIGRGSLVFV 162 Query: 146 ISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIG 205 + +P+ +NT AG + V A RN G L++++PAA+P ILSG++IG Sbjct: 163 LVHSVLWPMALNTYAGFQGVPDTLRMAGRNYGLRGIPYVLQILVPAALPAILSGLKIGWA 222 Query: 206 TAFIVVIVAEMI----AVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 254 A+ +I AE++ + GLG+ I + R ++DK+ AG+ T+ L+GL ++ Sbjct: 223 FAWRTLIAAELVFGASSGKGGLGWYIFQNRNELYTDKVFAGLATVILIGLMVE 275 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.143 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 593,983 Number of extensions: 23120 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 6 Length of query: 273 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 191 Effective length of database: 917,867 Effective search space: 175312597 Effective search space used: 175312597 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)