BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0351.p (321 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982522|ref|YP_001354776.1| ABC-type nitrate/sulfonate/bica... 106 2e-24 gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica... 85 6e-18 gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, peri... 74 2e-14 gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport sys... 70 2e-13 gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, peri... 60 1e-10 >gi|152982522|ref|YP_001354776.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 315 Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 1/211 (0%) Query: 26 DDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEA 85 D VIR+G LK H G Y + G K++ F D ++ +D GT A Sbjct: 29 DQVIRVGTLKLMH-GITPYFYDKFTPPGYKIEVIPFETPTDGKNAVVTKSVDFGTYGLAA 87 Query: 86 AISGRANGAPIYVVAGFAKGGARLVAGKDSGIKSVKDLKGKKVGVTRGGIHEVLLDAELG 145 A G A G P+ +VA G +VA DS I S+KDLKG++VG+ G EV++ L Sbjct: 88 ATLGAAAGEPVVIVAAQCNRGMAVVARADSKIASIKDLKGQRVGILPGSTQEVVILDRLK 147 Query: 146 QNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDTPIGE 205 Q G++ KD+ V ++F+++ AL +IDA + +EP S ++++G G V PY TP G Sbjct: 148 QEGMTVKDIKPVRVSFSEMASALERNDIDAFVGAEPGPSISVSRGIGKIVEYPYSTPTGT 207 Query: 206 PYRTMVMTEKFYTEKRPLAEKFMRCFLEATK 236 M K+ L + F++ +AT+ Sbjct: 208 VNMVMTTHADNLKSKQELIKVFLKIHRQATE 238 >gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 332 Score = 84.7 bits (208), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 127/283 (44%), Gaps = 28/283 (9%) Query: 12 LLASAGFSAPSHAADDVIRLG-------NLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKG 64 L S SA + AA + IRL +L H+G +++E GIKV + Sbjct: 18 LSTSVSLSAHAAAAPEEIRLDYAYYSPTSLVLKHFG---WLEEQVKSSGIKVKWTLSQGS 74 Query: 65 PDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAK-GGARLVAGKDSGIKSVKDL 123 ++ + A +D G+TA AA+ RANG PI V +++ L+ KDS IK+V DL Sbjct: 75 NRALEYLSANSIDFGSTAGLAAVLSRANGNPIKSVYVYSRPEWTALLVPKDSPIKTVADL 134 Query: 124 KGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQS 183 KGKK+ T+G + L L NGL DV IV+L AD AL IDA +P Sbjct: 135 KGKKIAATKGTDPYLFLLRTLKVNGLKKSDVEIVHLQHADGRAALESGRIDAWAGLDPHM 194 Query: 184 SQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYTEKRPLAEKFMRCFLEATKTFIDKPE 243 + + + G ++ Y Y + +TE F + ++ ++ + A + P Sbjct: 195 ASSELQA-GSRLL--YRNVAFNTYGFLNVTEDFAKKYPEQVKQVLQAYERARLWILANPR 251 Query: 244 VA------EKYVREVIFKNQITKEDFYDAIGNSPYAYDITAEH 280 A E + + K Q+ + DF ++PY I EH Sbjct: 252 EASQIQADEAKISLAVAKVQLNRTDF-----SNPY---IGREH 286 >gi|152983072|ref|YP_001352711.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 320 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 13/164 (7%) Query: 27 DVIRLGNLKFAHYGAVSYIK---EIAPKCG---IKVDEKVFAKGPDVMQGILAGELDVGT 80 DV+R+G F YG + +K ++ K +KV+ F GP +++ + G +D G Sbjct: 35 DVLRVG---FQKYGTLVVLKARGDLERKLANNNVKVEWFEFPTGPRLLEALNIGAIDFGV 91 Query: 81 TASEAAISGRANGAPIYVVAGF---AKGGARLVAGKDSGIKSVKDLKGKKVGVTRGGIHE 137 T I +A GA + V G+ + G LV ++S IKSVKDL GKK+ V++GG Sbjct: 92 TGDGPPIFSQAAGAKFFYV-GYEPPSPKGIALVVKEESSIKSVKDLVGKKIAVSKGGNVH 150 Query: 138 VLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEP 181 VLL L NGL D+ +YLA A+ A +D + +P Sbjct: 151 VLLLRALQVNGLKPTDIVPIYLAPAEGRAAFESGAVDGWVAFDP 194 >gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 317 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%) Query: 18 FSAPSHA--ADDVIRLGNLKFAHYGAV----SYIKEIAPKCGIKVDEKVFAKGPDVMQGI 71 F+ P+HA A D +R+G K + V +++ G+KV FA G +++ + Sbjct: 21 FALPAHAQKAGDTVRIGYQKSSTLITVLKTRGTLEQRLGALGVKVSWHEFASGLPLLEAL 80 Query: 72 LAGELDVGT-TASEAAISGRANGAPIYVVA--GFAKGGARLVAGKDSGIKSVKDLKGKKV 128 G +DV A + +A GA + +A + +V DS IK++ DL+GK+V Sbjct: 81 NVGAIDVSADVADTVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIKTLADLRGKRV 140 Query: 129 GVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAIN 188 G + LL A L + GLS KD+ + YLA AD A + IDA + +P Sbjct: 141 GFAKAAGAHYLLIAALEKAGLSLKDIQLAYLAPADGRAAFEREAIDAWVIWDP------- 193 Query: 189 KGFGVEVMKPYDTPIGEPYRTMVMTEKFYTEKRPLAEKFMRCFLEATKTFIDKPEVAEKY 248 F V + + R + +++Y P F + + K +D + K+ Sbjct: 194 --FLAAVQRQSQVRVLTDGRGLADYQRYYLSSTP----FAKARPDVVKVIVDALQETGKW 247 Query: 249 VRE 251 V++ Sbjct: 248 VKQ 250 >gi|152983332|ref|YP_001352429.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Janthinobacterium sp. Marseille] Length = 326 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 11/175 (6%) Query: 54 IKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGF--AKGGARLVA 111 I+V F GP +++G+ G +D GT I +A GA + V + ++ Sbjct: 70 IEVKWTEFPAGPVLLEGLNVGSIDFGTVGEAPPIFAQAAGADLVYVGNEPPSPTSEAIIV 129 Query: 112 GKDSGIKSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGK 171 K+S +K+V DLKGKKV + +G LL L + L KD+ ++LA AD A Sbjct: 130 PKNSTLKTVADLKGKKVALNKGSNVHYLLVKALEKASLDYKDIETIFLAPADARAAFERG 189 Query: 172 NIDAMMQSEPQSSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYTEKRPLAEK 226 ++DA + +P + A K G V+ +V +F+ R AEK Sbjct: 190 SVDAWVIWDPFLAAA-EKQIGARVLADGT--------GIVANHQFFLASRSYAEK 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 745,362 Number of extensions: 30696 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 6 Length of query: 321 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 238 Effective length of database: 914,170 Effective search space: 217572460 Effective search space used: 217572460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)