BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0350.p
         (456 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980389|ref|YP_001354675.1| signal recognition particle, su...   786   0.0  
gi|152980422|ref|YP_001354829.1| signal recognition particle rec...   131   8e-32

>gi|152980389|ref|YP_001354675.1| signal recognition particle,
           subunit SRP54 [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/453 (88%), Positives = 434/453 (95%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60
           MLDNLTQRLAK VKTMRGEARLTE+NTAEMLREVRLALLEADVALPAVREFI++VKEKAM
Sbjct: 1   MLDNLTQRLAKAVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFISRVKEKAM 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GE+V+GSLTPGQALVGVVQRELA++MGADLG EASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180
           VGKLAKYLRE KKKKVLTVSADVYRPAAIGQL+TVT Q GADFFPSQ TDKPVDIALAAL
Sbjct: 121 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVTAQVGADFFPSQATDKPVDIALAAL 180

Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240
           DYAK+H+H+VLI+DTAGRLGID+AMM EI+A+HAA+KPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAVKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300
           +DALPLTG+VLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDP+RMA+RILG
Sbjct: 241 SDALPLTGIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPARMADRILG 300

Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360
           MGDILALVEEARKGVDMEAAQ LA KIK GGKFDLNDFK+QL+QMKKMGG+++L+DKLPA
Sbjct: 301 MGDILALVEEARKGVDMEAAQGLAQKIKVGGKFDLNDFKSQLAQMKKMGGMSNLMDKLPA 360

Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420
           Q+Q AA  ANM  A+KQV RMEGIINSMTPQERAKPELIKA+RKRRIA GAGVQVQEVNR
Sbjct: 361 QLQQAASGANMGMADKQVIRMEGIINSMTPQERAKPELIKASRKRRIATGAGVQVQEVNR 420

Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRSMKGMLPG 453
           ML+QF+QMQ+MMKKLKGG MMKMMR MKGMLPG
Sbjct: 421 MLAQFDQMQTMMKKLKGGNMMKMMRGMKGMLPG 453


>gi|152980422|ref|YP_001354829.1| signal recognition particle
           receptor [Janthinobacterium sp. Marseille]
          Length = 419

 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 146/278 (52%), Gaps = 16/278 (5%)

Query: 29  EMLREVRLALLEADVALPAVREFIAKVKEKAMGEEVIGSLTPGQALVGVVQRELASLMGA 88
           ++  E+  ALL +D  + A +  +  +K K   E++  +          V+  L SL+  
Sbjct: 152 DLYEELESALLMSDAGVDATQFLLDALKRKVKNEKLTEA--------AQVKTALRSLLLE 203

Query: 89  DLGAEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLRENKKKKVLTVSADVYRPAA 148
            L      L      P ++++ G+ GAGKTTT+GKLAK+L+ + +  VL  + D +R AA
Sbjct: 204 MLTPLQKPLVLGQHQPLVMMITGVNGAGKTTTIGKLAKHLQAHNQS-VLLAAGDTFRAAA 262

Query: 149 IGQLQTVTGQAGADFFPSQPTDKPVDIALAALDYAKKHHHEVLIVDTAGRLGIDQAMMDE 208
             QL TV GQ       +Q +  P  +A  A+  A+     V++VDTAGRL     +M+E
Sbjct: 263 REQL-TVWGQRNNVTVIAQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMEE 321

Query: 209 IRAVH------AAIKPIETLFVVDAMLGQDAINTAKAFNDALPLTGVVLTKLDGDSRGGA 262
           ++ V        A  P E L ++D   GQ+A+   KAF+DAL LTG+V+TKLDG ++GG 
Sbjct: 322 LKKVKRVMAKGMASAPHEILLIIDGNTGQNALTQVKAFDDALGLTGLVVTKLDGTAKGGV 381

Query: 263 ALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300
             ++      P+ F GV E+++ L+ F+       +LG
Sbjct: 382 LAAIARARPIPVYFIGVGEQIEDLQPFNAQEFVEALLG 419


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 925,106
Number of extensions: 37873
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 370
Effective length of database: 903,079
Effective search space: 334139230
Effective search space used: 334139230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)