BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0348.p
         (146 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982549|ref|YP_001354878.1| hypothetical protein mma_3188 [...    79   8e-17

>gi|152982549|ref|YP_001354878.1| hypothetical protein mma_3188
           [Janthinobacterium sp. Marseille]
          Length = 153

 Score = 79.3 bits (194), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 19  LRHQLLRSACAIVIGLAALSAASHVFAAGKPGNSEYQQQIAACKSGSSTEDRATCLREAG 78
           L   ++  A  I + +  +S A+ + +A     S YQQ  AAC  G S +DRATCLR+AG
Sbjct: 3   LNKNVVYKALGISLCVFCISFAAGLASAADTALSNYQQDRAACMDGRSAQDRATCLRDAG 62

Query: 79  AAQQAAARGTLTDPSPAQLKENALRRCEGLPQSDRIDCEKRVNGQGRV-DGSVAEGGIFR 137
           AA   A  G L D   +  ++NA  RC  LP +DR DC +R++GQ     GSV+ GG+ R
Sbjct: 63  AALNEARHGKLKDDDASVYQKNAQIRCNALPDADRPDCIRRMSGQDTTVSGSVSGGGVLR 122

Query: 138 ETVTI 142
           ET TI
Sbjct: 123 ETTTI 127


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 285,048
Number of extensions: 8661
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 71
Effective length of database: 943,746
Effective search space: 67005966
Effective search space used: 67005966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 125 (52.8 bits)