BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0347.p
         (575 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981235|ref|YP_001354678.1| prolyl-tRNA synthetase [Janthin...  1016   0.0  
gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janth...    60   4e-10

>gi|152981235|ref|YP_001354678.1| prolyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 577

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/576 (83%), Positives = 520/576 (90%), Gaps = 2/576 (0%)

Query: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREE 60
           MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIK++G+GIYTYMPMGLRVIRKVEAI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKKIGSGIYTYMPMGLRVIRKVEAIIREE 60

Query: 61  MNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARS 120
           MN A A+ELLMP+VQPAELWQETGRW+KMGAELMRVKDRHGR+FAIQPTSEEVVTDV R+
Sbjct: 61  MNNAHAIELLMPLVQPAELWQETGRWDKMGAELMRVKDRHGREFAIQPTSEEVVTDVVRT 120

Query: 121 ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQAMYDA 180
           E++SY+QLP+NFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRD+DGLKKSYQ M+DA
Sbjct: 121 EIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDIDGLKKSYQIMFDA 180

Query: 181 YVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVIAATGEDALVYCPTSDYAANMEAAEALP 240
           YV+IF RFGL+FRAVAADNGAIGGSGSHEFHVIA TGEDALVYCP SDYAANMEAAEALP
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDALVYCPNSDYAANMEAAEALP 240

Query: 241 ADSSRGAATQALEKTATPAKSKCEAVAELLGLPLTRTVKSIVLAVDNEDP--AKKEIWLL 298
             S+R A TQAL KTATP K+KCE VA LL LPL +TVKSIVL V+ ED     K++WLL
Sbjct: 241 LSSARAAPTQALTKTATPGKAKCEDVAALLNLPLAQTVKSIVLTVEKEDKGVTSKQVWLL 300

Query: 299 LLRGDHELNEVKASKIPGLATYRFASEAEIVEWFGTPPGYLGPIGTKKPVKVVADRTVAN 358
           LLRGDHELNEVKA+KIPG+A YRFASEAEI+EWF TPPGYLGPI TKKPV +V DRTVAN
Sbjct: 301 LLRGDHELNEVKAAKIPGIAGYRFASEAEIIEWFDTPPGYLGPINTKKPVNLVVDRTVAN 360

Query: 359 MADFVCGANEADFHYTGANWGRDLPEPQVADIRNVVEGDASPDGKGVLAIQRGIEVGHVF 418
           M DFVCGANE DFH+TG NWGRDLPE QV DIRNVVEGD SPDGKG LAIQRGIEVGHVF
Sbjct: 361 MHDFVCGANEVDFHFTGVNWGRDLPEAQVFDIRNVVEGDPSPDGKGTLAIQRGIEVGHVF 420

Query: 419 QLGTTYSEAMKATYLDEAGKPQPLVMGCYGIGVTRILGAAIEQNFDDRGIIWPTSIAPFE 478
           QLGT YSE+MKATYLDE GKPQ + MGCYGIGVTRILGAAIEQNFDD+GIIWPT++APFE
Sbjct: 421 QLGTAYSESMKATYLDENGKPQLIQMGCYGIGVTRILGAAIEQNFDDKGIIWPTALAPFE 480

Query: 479 VVLCPMGYDRSEAVKTEIDKLYAQLTEAGVDVVLDDRGERPGAMFADWELIGVPHRIVVG 538
           VVLCPMGYDRSE VK E DKLY  L  AGVDV+LDDRGERPGAMFADWELIGVPHRIV+G
Sbjct: 481 VVLCPMGYDRSEGVKAETDKLYEALQAAGVDVILDDRGERPGAMFADWELIGVPHRIVIG 540

Query: 539 DRGLKDGNIEYQGRRDTEATQVPLAEALAFIKGKLA 574
           DRGLK+G +EYQGRRD  AT V L E L F++ KLA
Sbjct: 541 DRGLKEGKLEYQGRRDAAATPVALEEMLGFVQAKLA 576


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 635

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 38  GIYTYMPMGLRVIRKVEAIVREEMNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVK 97
           G+  + P G  + ++VE  +R+        E+  P +    LW++TG W+    E M V 
Sbjct: 261 GLIFWHPKGWSIWQQVEQYMRKVYQDNDYQEVKAPQILDRGLWEKTGHWDNY-RENMFVT 319

Query: 98  DRHGRDFAIQPTSEEVVTDVARSELRSYKQLPVNFYHIQTKFRDERRPRF-GLMRGREFT 156
           +   R +A++P +      +  S++RSY+ LP+ +       R+E      G+MR R FT
Sbjct: 320 ESENRSYALKPMNCPGHVQIYNSDMRSYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFT 379

Query: 157 MKDAYSFDRDVDGLKKSYQAMYDAYVRIFTRFGLE 191
             D + F  + + + +   A +   + ++  FG E
Sbjct: 380 QDDGHIFCTE-EQIAEEVTAFHAQAMAVYAAFGFE 413


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,349,423
Number of extensions: 59062
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 487
Effective length of database: 895,685
Effective search space: 436198595
Effective search space used: 436198595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)