BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0345.p
         (192 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982744|ref|YP_001354680.1| hypothetical protein mma_2990 [...   137   5e-34

>gi|152982744|ref|YP_001354680.1| hypothetical protein mma_2990
           [Janthinobacterium sp. Marseille]
          Length = 187

 Score =  137 bits (344), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 5/174 (2%)

Query: 12  SLFTPRILRRAVLACALLAACAGALAQS--FDEDFDD-EDKPWQEIAVQLPPTPQQQNLA 68
           S F+ R L + +LA ALLAA   ++AQ   +++ F++ E K W+E+ V  PP P+ +NL 
Sbjct: 4   SFFSARQLPQTLLALALLAATQISVAQQLEYNKGFEEAEAKNWEELEVPPPPAPKTENLQ 63

Query: 69  EFYLSPNATMKAYVDLNSVSIGTDKVVRYTVETKTEGGAVNVMYEGMRCETWEKKTYAFG 128
            FY+ P AT    +D  S++IG D V+RYT+   ++GGA N+ YEG+RC T+EKK YA G
Sbjct: 64  PFYVGPTATQTFAIDTKSLAIGKDGVIRYTLVAVSQGGAKNISYEGIRCATFEKKIYALG 123

Query: 129 HPDGTWSRSRRDKWQPIRDIGVNRIDGALFRDYFCEGKMIADNENVKSIINRLK 182
             DGTW+ SRR++W+ I    VNR   AL +DYFC    I  +E  K ++NR+K
Sbjct: 124 REDGTWAPSRRNQWEGIVRSKVNRQHAALAQDYFCSNLTIVGDE--KEMLNRMK 175


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 419,530
Number of extensions: 15624
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 114
Effective length of database: 932,655
Effective search space: 106322670
Effective search space used: 106322670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)