BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0343.p
         (369 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981094|ref|YP_001354682.1| GTPase ObgE [Janthinobacterium ...   624   e-180
gi|152980990|ref|YP_001354821.1| hypothetical protein mma_3131 [...    72   8e-14

>gi|152981094|ref|YP_001354682.1| GTPase ObgE [Janthinobacterium sp.
           Marseille]
          Length = 369

 Score =  624 bits (1608), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/370 (84%), Positives = 345/370 (93%), Gaps = 2/370 (0%)

Query: 1   MKFIDEARIEVVAGDGGNGVASFCREKFRPFGGPDGGDGGKGGTIWAVADRNVNTLIDYR 60
           MKFIDEA+IEV+AGDGGNGVASFCREKFRPFGGPDGGDGGKGG+I+AVADRN+NTL+D+R
Sbjct: 1   MKFIDEAKIEVIAGDGGNGVASFCREKFRPFGGPDGGDGGKGGSIYAVADRNINTLVDFR 60

Query: 61  YAKLHRAGRGENGRGSDCYGKGADDVYLRMPVGTLIVDINTGEHIADLTFHGQTVMLAKG 120
           +AK+H+A  GENGRG+DCYGKGADD+ LRMPVGTLI+D N GE IADLT HGQ V++AKG
Sbjct: 61  FAKMHKAKNGENGRGADCYGKGADDIKLRMPVGTLIIDNNDGELIADLTEHGQEVLIAKG 120

Query: 121 GEGGWGNIHFKTSTNRAPRQKTEGKEGERRELRLELKVLADVGLLGMPNAGKSTFITAVS 180
           GEGGWGNIHFK+STNRAPRQK+EGKEGERRELRLELKVLAD+GLLGMPNAGKSTFI+AVS
Sbjct: 121 GEGGWGNIHFKSSTNRAPRQKSEGKEGERRELRLELKVLADIGLLGMPNAGKSTFISAVS 180

Query: 181 NARPKIADYPFTTLHPNLGVVRVSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGL 240
           NARPKIADYPFTTLHPNLGVVRVSHEKSFVIADIPGLIEGA+DGAGLG+QFLRHLQRT L
Sbjct: 181 NARPKIADYPFTTLHPNLGVVRVSHEKSFVIADIPGLIEGASDGAGLGIQFLRHLQRTRL 240

Query: 241 LLHIVDLAPFNDEVDPVKEAKAIVKELKKYDQSLFDKPRWLVLNKLDVVPEAERAKRVKD 300
           LLHIVDLAPF D VDPVKEAKAIVKELKKYD++LFDKPRWLVLNKLD+VPE ER KRVKD
Sbjct: 241 LLHIVDLAPF-DNVDPVKEAKAIVKELKKYDEALFDKPRWLVLNKLDMVPEEERKKRVKD 299

Query: 301 FVKRFGWKGPVFEISALNRDGCEDLINEIYKYLETKRAEEHRSEET-QMTEEARAISSID 359
           F+KRFGWKGPVFEISAL R+GC DL+ EIY+Y+  +R  E R+EET QM EEAR I SID
Sbjct: 300 FIKRFGWKGPVFEISALTREGCSDLVTEIYEYIAVQRQAEQRTEETPQMVEEARGIDSID 359

Query: 360 PDDPRFKVLD 369
           PDDPRFK++D
Sbjct: 360 PDDPRFKIID 369


>gi|152980990|ref|YP_001354821.1| hypothetical protein mma_3131
           [Janthinobacterium sp. Marseille]
          Length = 363

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 26/140 (18%)

Query: 162 VGLLGMPNAGKSTFITAVSNARPKIADYPFTTLHPNLGVVRVSHEKSFVIA--------- 212
            G++G+PN GKST   A++ A     +YPF T+ PN+G+V V   +   +A         
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIPAENYPFCTIEPNVGMVEVPDPRLQALAEIVKPERIL 64

Query: 213 -------DIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFNDE--------VDPV 257
                  DI GL+ GA+ G GLG QFL H++ T  ++++V    F D+        ++P+
Sbjct: 65  PATVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVNVVRC--FEDDNVIHVAGKINPL 122

Query: 258 KEAKAIVKELKKYDQSLFDK 277
            + + I  EL   D    +K
Sbjct: 123 DDIEVIQTELALADMGTVEK 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 845,988
Number of extensions: 34551
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 284
Effective length of database: 906,776
Effective search space: 257524384
Effective search space used: 257524384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)