BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0339.p
         (358 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983082|ref|YP_001353397.1| hypothetical protein mma_1707 [...    72   6e-14

>gi|152983082|ref|YP_001353397.1| hypothetical protein mma_1707
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 4/80 (5%)

Query: 19  YRPWLDGVRAVAILLVLLEHTNLFKQYNLGG-VGVGIFFALSGYLITGLLWDEFAREGRL 77
           YRP +DG+RAVAIL V++ H   F QY +GG VGV IFF +SG+LI+ ++  E   EG+ 
Sbjct: 58  YRPDIDGLRAVAILPVVIFHA--FPQYVIGGFVGVDIFFVISGFLISSIIIKEI-NEGKF 114

Query: 78  ALVPFYIRRFARLAPALLLV 97
               FY RR  R+ PAL+L+
Sbjct: 115 TFQQFYARRIKRIFPALILI 134


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 644,747
Number of extensions: 20402
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 274
Effective length of database: 910,473
Effective search space: 249469602
Effective search space used: 249469602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)