BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0328.p
         (287 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980010|ref|YP_001354688.1| leader peptidase (prepilin pept...   279   1e-76

>gi|152980010|ref|YP_001354688.1| leader peptidase (prepilin
           peptidase) / N-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 286

 Score =  279 bits (713), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/271 (56%), Positives = 197/271 (72%)

Query: 8   AVSGSPVLSGVAALLGLLVGSFLNVVIHRLPAMMLRESANFVAHERGEALPHTERYNLWL 67
           A +GS + + +A + GLL+GSFLNVVIHR+P MM RES N+VA E G+ LPH +RYNL +
Sbjct: 7   APAGSVLPAVLAGIFGLLIGSFLNVVIHRIPKMMQRESDNYVASESGQPLPHEDRYNLIV 66

Query: 68  PHSACPHCATPLALHHKLPVLSWLLLRGRCAYCSAPISLRYPLVELLCAVLFALLAWRYG 127
           P SACP C   ++    +PV+S++ + G+C  C  PIS+RYP++ELL  +L A L W +G
Sbjct: 67  PRSACPQCGHQISALQNIPVISYVAIGGKCTACKTPISIRYPIIELLSGLLSAFLIWHFG 126

Query: 128 LGLTGLALMTGAAFLVALAFIDAQTMLLPDDLTLPLLWLGLLVNLTHRLVPLQDAVLGAM 187
            G  GL  +     L+AL FIDA T LLPDDLTL LLWLGLL+NL    VPL +AV+GA 
Sbjct: 127 SGWLGLGTLLFTYLLIALTFIDADTQLLPDDLTLSLLWLGLLINLNATFVPLHEAVIGAA 186

Query: 188 AGYGVLWLIFWCFKLTTGKEGLGYGDFKLMAALGAWLGWQALPLVLLLASALGAVLGLAL 247
           AGY  LW I+W FKL TGKEG+GYGDFKL+AALGAWLGW+ LP+++LL+S +GAV+G+AL
Sbjct: 187 AGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPVIILLSSLVGAVVGIAL 246

Query: 248 MLGGRHQRGQAIPFGPCLALAGMLALVLGHD 278
           ++  +  R   IPFGP LA AG++ALV G  
Sbjct: 247 IVLAKRGRDIPIPFGPYLAAAGLIALVYGKS 277


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 479,233
Number of extensions: 14452
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 205
Effective length of database: 917,867
Effective search space: 188162735
Effective search space used: 188162735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)