BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0327.p
         (206 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980135|ref|YP_001354689.1| dephospho-CoA kinase [Janthinob...   215   2e-57

>gi|152980135|ref|YP_001354689.1| dephospho-CoA kinase
           [Janthinobacterium sp. Marseille]
          Length = 208

 Score =  215 bits (548), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 143/197 (72%)

Query: 6   ERFTVGLTGGIGSGKTTVANLFAELGASLVDTDAIAHALTAPDGLAIAPLREHFGDDFID 65
           +RF+VGLTGGIGSGK+TVA+LFA  GA+++DTD IAH LTA  G AI  ++E FG + I 
Sbjct: 8   DRFSVGLTGGIGSGKSTVADLFAAQGAAVIDTDLIAHQLTAVGGAAIPAIKEAFGAELIL 67

Query: 66  AHGAMDRTRMRQHVFGNPAARHALEAILHPLIRSETLRQAEAATGSYVIFVVPLLVESGT 125
             GAMDR  MR+ VF +   +  LEAIL PLIR  T   AE A G+Y++FVVPLLVESG 
Sbjct: 68  PGGAMDRATMRERVFVDANEKKRLEAILFPLIRRATREAAEQAEGAYLLFVVPLLVESGL 127

Query: 126 WVGRASRILVVDCPEEVQIARVMQRNGLQRAEVEAIMAAQASRQARLAVAHDVIDNGGDN 185
           W  R SR+L +DC EEVQIARVMQRN L   +V AI+A+QASR ARLA A DV+ N GD+
Sbjct: 128 WQQRVSRVLTIDCSEEVQIARVMQRNNLSETQVRAIIASQASRAARLAAADDVVSNEGDS 187

Query: 186 AALPAQVDRLHAHYLAL 202
           AAL  QV RLH  Y+ L
Sbjct: 188 AALLPQVARLHQMYMNL 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 491,838
Number of extensions: 20192
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 127
Effective length of database: 928,958
Effective search space: 117977666
Effective search space used: 117977666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)