BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0326.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981169|ref|YP_001354690.1| hypothetical protein mma_3000 [...   410   e-116

>gi|152981169|ref|YP_001354690.1| hypothetical protein mma_3000
           [Janthinobacterium sp. Marseille]
          Length = 251

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/251 (76%), Positives = 220/251 (87%)

Query: 1   LIVYEYPFNERIRTLLRLEDLYEKFVFFLHQESPHQHHIALATIFEMLEVAGRADLKSDL 60
           +IVYEYPFNERIRTLLRLEDLYEKF FF+ Q+ P  HH+ALAT+FEMLEVAGRADLKSDL
Sbjct: 1   MIVYEYPFNERIRTLLRLEDLYEKFAFFIGQDHPQHHHVALATMFEMLEVAGRADLKSDL 60

Query: 61  LQELERQKQILLAYQSNPNVEPEMLNAILAEVDQASSALAAAQGKTGQNIRDNEWLMSIR 120
           LQELERQKQ LL ++SNPNVE EML+AIL ++D+ S+AL A+QGKTGQ+IR+NEWLMSIR
Sbjct: 61  LQELERQKQTLLGFKSNPNVEAEMLDAILFDLDRISAALIASQGKTGQHIRENEWLMSIR 120

Query: 121 GRTIIPGGACEFDLPAYYAWQQHPFERRFNDISNWFAPLVPLFDAIGIVMRLLRESGHAV 180
           GRTIIPGGACEFDLP+YYAWQ    E+R  DI  WF PL PLFDAIG+V+RLLRESG  V
Sbjct: 121 GRTIIPGGACEFDLPSYYAWQHDSAEQRLADIHKWFTPLAPLFDAIGMVLRLLRESGRPV 180

Query: 181 KINAEGGSYQQMLQGKVYQMLRLSLDIELGAIPEISANKYMLWVRFTQQDGDEKPRSFEG 240
           K+ A+ GSYQQMLQGK YQMLRL++D  LGAIPEISANKYMLW+RFT QDGD KP++FEG
Sbjct: 181 KMIAQTGSYQQMLQGKAYQMLRLNIDEALGAIPEISANKYMLWIRFTSQDGDMKPKAFEG 240

Query: 241 EVPFELALCGF 251
           +VPFEL+LC F
Sbjct: 241 DVPFELSLCSF 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 597,988
Number of extensions: 24024
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)