BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0323.p
         (291 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981247|ref|YP_001354693.1| hypothetical protein mma_3003 [...   482   e-137

>gi|152981247|ref|YP_001354693.1| hypothetical protein mma_3003
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score =  482 bits (1241), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/289 (79%), Positives = 258/289 (89%), Gaps = 2/289 (0%)

Query: 1   MTQLDQFLQRAEALLARVEAILPQAATREPDWNAAVAFRWRGATAQRP-GYLQAVGHISQ 59
           MTQLDQFL RAEALL R+E+ILP A    PDWNA +AFRWR ++ +   GYLQ V H+S 
Sbjct: 1   MTQLDQFLIRAEALLERLESILPPAVP-TPDWNAGIAFRWRKSSGKNGRGYLQPVAHLSP 59

Query: 60  IALSDLHNIGPQKEQIDQNTRQFVAGRPANNVLLTGARGTGKSSLIKACLNQYADQGLRL 119
           IAL+DLHNIGPQK+QI+QNTRQFV G PANNVLLTGARGTGKSSLIKACLNQ+ADQGLRL
Sbjct: 60  IALTDLHNIGPQKQQIEQNTRQFVEGVPANNVLLTGARGTGKSSLIKACLNQFADQGLRL 119

Query: 120 IEVDKDDLHDLQDIVELVATRPERFIVFCDDLSFEEGEGGYKALKVALDGSIAAQSDNVL 179
           IEVDKDDL DL DIV+LVA RPERFI+FCDDLSFEEGEGGYKALKVALDGSI+AQSDNVL
Sbjct: 120 IEVDKDDLGDLADIVDLVAGRPERFIIFCDDLSFEEGEGGYKALKVALDGSISAQSDNVL 179

Query: 180 IYATSNRRHLMPERLSDNSTYTHTEDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDFL 239
           IYATSNRRHL+PER+SDN+ Y   ++GDLHPGETVEEKISLSERFGLWVTFYPF+QDD+L
Sbjct: 180 IYATSNRRHLLPERMSDNAGYKTDDNGDLHPGETVEEKISLSERFGLWVTFYPFRQDDYL 239

Query: 240 DIVAHWLRHFGCTDAQIAEARADALRWALQRSSRSGRVAWQFARDYAGR 288
           DIVAHWL+HFGC   QI EAR +AL+WALQR SRSGRVAWQFA+D+AG+
Sbjct: 240 DIVAHWLKHFGCNPQQIEEARTEALQWALQRGSRSGRVAWQFAKDHAGK 288


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 692,118
Number of extensions: 28385
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 209
Effective length of database: 917,867
Effective search space: 191834203
Effective search space used: 191834203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)