BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0322.p
         (411 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980606|ref|YP_001354694.1| arginine biosynthesis bifunctio...   647   0.0  

>gi|152980606|ref|YP_001354694.1| arginine biosynthesis bifunctional
           protein [Janthinobacterium sp. Marseille]
          Length = 411

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/411 (74%), Positives = 355/411 (86%)

Query: 1   MAVNSPIPVSSDLKAVAGIELGHAEAGVRKANRKDVLVMKLAETATVAGVFTKNRFCAAP 60
           MAVN P+P+  +L AVAGIELGHAEAG+RKANRKDVLVMKLA TATVAGVFT+NRFCAAP
Sbjct: 1   MAVNLPLPIPENLTAVAGIELGHAEAGIRKANRKDVLVMKLAPTATVAGVFTQNRFCAAP 60

Query: 61  VQICQANLAQLSADKPIRALVINTGNANAGTGEEGLQRAKSVCAALAEQMGLEPQQILPF 120
           VQ+C+ +L +L A  PIRALVINTGNANAGTGE GL  AK+ C ALA  +G +  QILPF
Sbjct: 61  VQVCKEHLGKLQAGAPIRALVINTGNANAGTGETGLADAKATCTALAGLLGCDAAQILPF 120

Query: 121 STGVILEPLPADRIIAGLPQAIANLKADNWFNAAESIMTTDTQPKAASRTLTIAGKQVVM 180
           STGVILEPLP +R+ AGLPQAI+NL +DNW NAA SIMTTDTQPKAASR ++I G+ + +
Sbjct: 121 STGVILEPLPIERLKAGLPQAISNLNSDNWHNAALSIMTTDTQPKAASRQVSINGQTITL 180

Query: 181 TGISKGAGMIKPNMATMLGFLAFDAKLPQALLNRLVKDAADDSFNCITIDGDTSTNDSFI 240
           TGISKGAGMIKPNMATMLGF+A DAK+ Q +L+ L K+ A+ SFNCITIDGDTSTNDSFI
Sbjct: 181 TGISKGAGMIKPNMATMLGFMAMDAKVAQPVLDHLTKEVANRSFNCITIDGDTSTNDSFI 240

Query: 241 LMATGAGELEITSADSEEYQQLAAAVTDLSQHLAHQIVRDGEGATKFIEVAVEDGKSVEE 300
           ++ATGA  +E+ + D+ EYQ LAAAV  LSQ LA  IVRDGEGATKFI V VE+G++VEE
Sbjct: 241 VIATGASSVEVNAIDTPEYQALAAAVLGLSQELAQMIVRDGEGATKFITVTVEEGRNVEE 300

Query: 301 CRQIAYSIGHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVSKINLWLDDVWVAKDGGR 360
           CR+IAYSI HSPLVKTAFFASDPNLGRILAAIGYAG+DDLDV+ +NL+LDDVWVAK+GGR
Sbjct: 301 CRKIAYSIAHSPLVKTAFFASDPNLGRILAAIGYAGVDDLDVTTLNLYLDDVWVAKNGGR 360

Query: 361 NPDYREEDGQRVMKKAEIVVRVKLARGSAKASIWTCDLSHDYVSINADYRS 411
           NPDY+E DGQRVMK++EI VRVKL RG A A+IWTCDLSH+YV+INADYRS
Sbjct: 361 NPDYQEADGQRVMKQSEITVRVKLGRGQADATIWTCDLSHEYVTINADYRS 411


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 944,509
Number of extensions: 38745
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 325
Effective length of database: 903,079
Effective search space: 293500675
Effective search space used: 293500675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)