BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0320.p
         (917 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979895|ref|YP_001354695.1| preprotein translocase SecA sub...  1638   0.0  

>gi|152979895|ref|YP_001354695.1| preprotein translocase SecA
           subunit [Janthinobacterium sp. Marseille]
          Length = 920

 Score = 1638 bits (4241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/920 (84%), Positives = 853/920 (92%), Gaps = 3/920 (0%)

Query: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPSVEKLTDAELQAKTPEFKQRIAGGETLDA 60
           MS LT+IFGSRNQRLLKQYQK VR+INALEP++E+L+D  L+AKTPEFK+R+A GE +D 
Sbjct: 1   MSLLTQIFGSRNQRLLKQYQKTVREINALEPALEQLSDEALKAKTPEFKERLAKGEDIDK 60

Query: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120
           +LPEAFAVCREAS+R+LKMRHFDVQLIGGMALH+GKIAEM TGEGKTLMATLPAYLNALA
Sbjct: 61  LLPEAFAVCREASKRILKMRHFDVQLIGGMALHYGKIAEMGTGEGKTLMATLPAYLNALA 120

Query: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180
            KGVHVVTVNDYLAQRDAE M  LY WLGLTTG+NLSQ++H+ KQ AY ADITYGTNNEF
Sbjct: 121 AKGVHVVTVNDYLAQRDAEWMSTLYGWLGLTTGINLSQIDHEAKQTAYNADITYGTNNEF 180

Query: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV 240
           GFDYLRDNMV+D  DRVQR L++AIVDEVDSILIDEARTPLIISGQAENHT+LYHK+N V
Sbjct: 181 GFDYLRDNMVYDTGDRVQRGLHYAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINEV 240

Query: 241 PPLLTLQIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL 300
           PPLL+LQIGEETPDGKGK+EVPGDYTKDEKSHQVLLTEAGH+KAE+ILT+MGLLPEGASL
Sbjct: 241 PPLLSLQIGEETPDGKGKIEVPGDYTKDEKSHQVLLTEAGHEKAEQILTRMGLLPEGASL 300

Query: 301 YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360
           YDAANITLIHHLYAALRAHTLYH+DQHYVVQNGEVVIVDEFTGRLMTGRRWS+GLHQAVE
Sbjct: 301 YDAANITLIHHLYAALRAHTLYHKDQHYVVQNGEVVIVDEFTGRLMTGRRWSEGLHQAVE 360

Query: 361 AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN 420
           AKE VKIQNENQTLASITFQNYFRMY+KLSGMTGTADTEAYEFQEIY LETVVIPPNRP+
Sbjct: 361 AKEHVKIQNENQTLASITFQNYFRMYSKLSGMTGTADTEAYEFQEIYKLETVVIPPNRPS 420

Query: 421 ARKDRQDQVYKTAQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILTKSKLPHNV 480
            RKDRQDQVYK++ EKY AM+KDIQDCYERGQPVLVGTTSIENSELLSGILTK+KLPHNV
Sbjct: 421 QRKDRQDQVYKSSDEKYGAMLKDIQDCYERGQPVLVGTTSIENSELLSGILTKAKLPHNV 480

Query: 481 LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADDSLSDADKA 540
           LNAKQHAREAEI+AQAGRPK ITIATNMAGRGTDIVLGGNV KQ+Q+IEA+D+LSDADKA
Sbjct: 481 LNAKQHAREAEIIAQAGRPKAITIATNMAGRGTDIVLGGNVAKQVQIIEANDALSDADKA 540

Query: 541 AKSQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600
           A++Q+LR+EWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD
Sbjct: 541 AQAQKLREEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600

Query: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV 660
           DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIV+RSIESAQRKVEARNFDIRKQLLEYDDV
Sbjct: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDV 660

Query: 661 ANDQRKVIYQQRNELLESVDMAEMIASLRDGVFTDLFRQHVPAESMEEQWDIPGLQAALK 720
           ANDQRKVIYQQRNELLE+ D++EMI SLR GVF+DLFR +VP +SMEEQWD+PGL A L+
Sbjct: 661 ANDQRKVIYQQRNELLETTDVSEMITSLRQGVFSDLFRTYVPEQSMEEQWDLPGLDAVLR 720

Query: 721 NEWQLDVDLDATLKAEPDMADDELLEHLLKAAKEAYDAKVAVVGVEAFAGFERSVMLQAI 780
           +EW+LD  L   L+AEP + D+E+LE LLK   + Y  K+ +VG EAFAGFERSVMLQA+
Sbjct: 721 DEWKLDFSLAKVLEAEPTITDEEMLERLLKFTDDVYAEKIEIVGKEAFAGFERSVMLQAV 780

Query: 781 DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI 840
           D+HWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELF QML+LIK+EV+K+VMTVRI
Sbjct: 781 DSHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFGQMLNLIKDEVVKIVMTVRI 840

Query: 841 QSREEIEAAEESLSGGSPINVNYQHADFDPEAAPEELLAPTVQATSDDGSE---YPKVGR 897
           QSREEI+AAEE LS     NV+YQHADFD +AAPEELLAPT  A+  + ++    PKVGR
Sbjct: 841 QSREEIDAAEEQLSQSHVENVHYQHADFDADAAPEELLAPTAVASEANQTQVNALPKVGR 900

Query: 898 NDPCPCGSGKKYKQCHGKLA 917
           NDPCPCGSGKKYKQCHG+LA
Sbjct: 901 NDPCPCGSGKKYKQCHGRLA 920


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,021,384
Number of extensions: 83278
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 917
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 825
Effective length of database: 880,897
Effective search space: 726740025
Effective search space used: 726740025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)