BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0319.p
         (325 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981693|ref|YP_001354696.1| M23B family peptidase [Janthino...   388   e-109
gi|152981639|ref|YP_001351991.1| hypothetical protein mma_0301 [...    84   2e-17
gi|152980876|ref|YP_001353825.1| lipoprotein nlpD precursor [Jan...    66   2e-12
gi|152981371|ref|YP_001354913.1| M23/M37 familypeptidase [Janthi...    65   8e-12

>gi|152981693|ref|YP_001354696.1| M23B family peptidase
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/310 (60%), Positives = 245/310 (79%), Gaps = 5/310 (1%)

Query: 1   MQIILLHPRFTKARSITLGTKHIL-LLLLLMLTMVAGSSMGITYFLLNRAGNPDASPMLH 59
           MQIILLHPRFT A+S+TL  +H+L L +  +L ++ G+S  ++Y + + A +   SP + 
Sbjct: 1   MQIILLHPRFTHAKSVTLTRRHLLALFVTFVLAVILGASF-LSYLVFSNASSM-PSP-VR 57

Query: 60  KLAVSMSQEEDGRNEKYLKENLAMMAVKVGEMQAQMMRLDALGERVQGLAGIRPEEFNFK 119
           +L    S  E+   +K+LKENLA+MA ++GEMQAQ+MRLDALGERVQGLAG++P EFNF+
Sbjct: 58  ELVSGASGGEEANKDKFLKENLALMARRLGEMQAQLMRLDALGERVQGLAGVKPTEFNFR 117

Query: 120 EAPGRGGAEVSSQAGPARDVSMDELRRMLDSLAVDAGHRADYLNAVESTLMGDKIKSRLL 179
           E PGRGG E       +RD++M E + +LD++A D   RADY+N VESTLM DKIKS+LL
Sbjct: 118 EMPGRGGLE-PMDGTSSRDLTMSEFKALLDAMANDVERRADYMNVVESTLMSDKIKSKLL 176

Query: 180 PTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVIASEYHYQFG 239
           PT QPVNV+YN+S+FG RLDPF+G +A HEG+DF AP+GT IVAAA GVV  +E+H Q+G
Sbjct: 177 PTIQPVNVSYNASTFGRRLDPFSGRSAMHEGIDFAAPIGTPIVAAAGGVVTVAEFHPQYG 236

Query: 240 NMLEIDHGNNIITRYAHASRLYVKVGDIVKRGQHVADVGSTGRSTGAHLHFEVRIRGIAQ 299
           NM+EIDHGN++ITRYAH SRL ++VGDIV+RGQH+AD+G+TGRSTG HLHFEVR++G+AQ
Sbjct: 237 NMMEIDHGNDMITRYAHTSRLLMQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRVKGVAQ 296

Query: 300 DPRKFLALGA 309
           DP KFL  GA
Sbjct: 297 DPHKFLLAGA 306


>gi|152981639|ref|YP_001351991.1| hypothetical protein mma_0301
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 171 GDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVI 230
           G  +K   L +  P+  +  SS F  R  P +G    H+G+DF A +GT I A+  GV+ 
Sbjct: 280 GKSLKKAFLKS--PLEFSRISSGFSVRKHPISGLWKAHKGVDFAAAIGTPIRASGDGVID 337

Query: 231 ASEYHYQFGNMLEIDHGNNIITRYAHASRLYVKV--GDIVKRGQHVADVGSTGRSTGAHL 288
            +     +GN++ I H +   T YAH SR    +  G  V +GQ +  VG TG STG HL
Sbjct: 338 FAGTQRGYGNVVIIKHWSKYSTAYAHMSRFATNLRKGSKVSQGQVIGYVGMTGWSTGPHL 397

Query: 289 HFEVRIRGIAQDP 301
           H+E R+   A+DP
Sbjct: 398 HYEFRVNNEARDP 410


>gi|152980876|ref|YP_001353825.1| lipoprotein nlpD precursor
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 208 HEGLDFPAPVGTRIVAAAAG-VVIASEYHYQFGNMLEIDHGNNIITRYAHASRLYVKVGD 266
            +GLD     G  ++AA AG V+ A      +GN++ + H +N+++ YAH   + VK G 
Sbjct: 217 RKGLDIAGKSGQAVLAAGAGKVMYAGSGIRGYGNLVIVKHTSNLLSAYAHNKAILVKEGQ 276

Query: 267 IVKRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDPRKFL 305
            V +GQ +A++G +  S    LHFE+R +G   DP KFL
Sbjct: 277 NVNKGQKIAEMGDSD-SDSVKLHFEIRQQGKPVDPSKFL 314


>gi|152981371|ref|YP_001354913.1| M23/M37 familypeptidase
           [Janthinobacterium sp. Marseille]
          Length = 466

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%)

Query: 209 EGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNIITRYAHASRLYVKVGDIV 268
           +GL   A  G+ + A AAG V+ +E+   FGN++ +DHG+  +T Y +   +    GD V
Sbjct: 367 KGLFIRAEEGSEVKAVAAGRVVFAEWLRGFGNLIIVDHGSQYMTIYGNNQSVLKHAGDTV 426

Query: 269 KRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDPRKFLAL 307
           K G  +A  G++G +  + L+FE+R +G A DP  ++ +
Sbjct: 427 KSGDVIASTGNSGGNEQSGLYFEMRHQGRAFDPLSWVTI 465


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 730,086
Number of extensions: 28804
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 242
Effective length of database: 914,170
Effective search space: 221229140
Effective search space used: 221229140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)