BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0318.p
         (181 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983303|ref|YP_001354697.1| hypothetical protein mma_3007 [...   170   4e-44

>gi|152983303|ref|YP_001354697.1| hypothetical protein mma_3007
           [Janthinobacterium sp. Marseille]
          Length = 166

 Score =  170 bits (431), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 114/162 (70%), Gaps = 4/162 (2%)

Query: 4   PSTFTPYRPAPTSAQRMAKSTKGAADFLRSNSTMAALLPALARMGTLQQSVAANLPAMFA 63
           PS+F P++ + T      KS KGAA+FLRS+  +AALLPA+ RM +LQ+  AA LPAMFA
Sbjct: 5   PSSFIPFKQSTTPQ----KSAKGAAEFLRSHDKLAALLPAVTRMASLQKDCAAALPAMFA 60

Query: 64  ACQILQFEAGVLVMSAPNAALAARLKQQTPRLQDRLLKDGWQVNSIRIKVQVGRMAPPPP 123
            C +LQFEA  LV+S PNAALAARLKQQ P+LQD LL+ GWQVN+IR+KVQV +      
Sbjct: 61  HCAVLQFEANQLVLSTPNAALAARLKQQLPKLQDELLQRGWQVNAIRLKVQVAKTLIKST 120

Query: 124 PKRVLELTENALSSFAELSSTLARDPRSQGLKEAIDAMIRRR 165
             + L L + ALS+FAEL + L   PR+Q LK A+  M++R 
Sbjct: 121 ASKQLVLPDRALSAFAELGAALDDSPRNQALKAALGTMMQRH 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 349,932
Number of extensions: 11750
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 103
Effective length of database: 932,655
Effective search space: 96063465
Effective search space used: 96063465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)