BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0317.p (888 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha sub... 117 2e-27 gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydroge... 95 2e-20 gi|152982608|ref|YP_001352175.1| nitrate reductase catalytic sub... 62 1e-10 >gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 946 Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 124/525 (23%), Positives = 224/525 (42%), Gaps = 52/525 (9%) Query: 86 RVAAPMVRKSWLARRGADAATRHLRGHEPFVQVSWDEALALVAEAILSTAEQHGNQAL-- 143 R+ P++R++ + G D R E F + +W+EAL + + HG ++L Sbjct: 282 RLTKPLIRRADAPKSG-DFIMDPDRVMEVFREATWEEALEVAGGNFAKIRDTHGKKSLAG 340 Query: 144 FSSSYGGWSHAGLMRPQVLQGRLFGLIGGHSTTTGDYSGGASQISLPYVIGDMEVYSPQT 203 F S+ G A L + V G FG T +S ++L IG V +P Sbjct: 341 FGSAKGSNEEAYLFQKLVRTG--FGSNNVDHCTR--LCHASSVVALLEGIGSGAVSNPVM 396 Query: 204 SWEVVAAHTDIMVWVGADPIKNNRIEYTVADHQMTENW-KKIRARGVKFISINPQYTATD 262 ++++ +GA+P N H + W K + G K I +P+ T Sbjct: 397 D----VTKAEVVIIIGANPTVN---------HPVAATWIKNAVSNGTKLIVCDPRRTEMS 443 Query: 263 ELLQAEWIKIVPNTDTALFLAMAFHVLSTGRQDQAYLAKYTVGFERFRDYLLGRDADGSP 322 + +++ +TD A+ AM +++ G D+ ++ T+G+E R + G Sbjct: 444 RIAH-RFMQFKADTDVAMLNAMMNVIVTEGLVDKEFIESRTIGYEELRKNVEG------- 495 Query: 323 PKTPEWAAAITGVPAAQIRTLAELFSGPQRVQFAGAWSLQRAHHGEMTHWAIINFAAMVG 382 TPE A I G+ A +R +A L++ + + + HG +I A M G Sbjct: 496 -YTPELMAPICGIDAETLRYVARLYATSKGSMILWGMGVSQHIHGTDNARCLIALALMTG 554 Query: 383 KIGKPGQGVGFSWHYGGGGMVQSNAIMPVGLSQGRNPVTTRCPAS-----RISEMLLNPG 437 +IG+PG G+ ++P+ ++ + A+ +S LL+P Sbjct: 555 QIGRPGTGLHPLRGQNNVQGASDAGLIPMVYPDYQSVSDPKIRANFAKAWNMSVDLLDPE 614 Query: 438 GKYTRDGATHSYPD--VRLIYNAGNNFLSHQQNTNELIRALNRQVPTIICQDPWWCASAR 495 T H+ D +R +Y G N + N AL + ++ QD + +A Sbjct: 615 PGLTVVEIMHAITDGKIRGLYVQGENPAMSDPDANHAREAL-AALDHLVVQDIFLTETAY 673 Query: 496 FADIVLPATSELERNDISSGGTYSN-DKIYAM-RQVIQPYGQSLDDLEIFSRLAGLMGVG 553 AD++LPA++ E+ GT++N D+ M RQ + P G++ DL I ++A +G+ Sbjct: 674 LADVILPASAFPEKT-----GTFTNTDRTVQMGRQALNPPGEAKQDLWIIQQMANRLGLD 728 Query: 554 YQFTEGKSIMQILTESFQAAQPT---LSFQRFWREGVARLPVPQE 595 +Q+ K + ++ E + P+ +++ R RE P +E Sbjct: 729 WQY---KHVSEVFDE-MRHTMPSIAGITWDRLEREDSVTYPCEKE 769 >gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 957 Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 170/733 (23%), Positives = 282/733 (38%), Gaps = 150/733 (20%) Query: 47 FKAVVKKGVLVGIQPLPELDATPTTMLTKGVLSRVYS--KTRVAAPMVRKSWLARRGADA 104 FKA +K +V + P P+ A KG + Y+ K R+ PM+R Sbjct: 253 FKAEMKGNEVVRMVPNPDGKANQGHACVKGRFAWGYATHKDRMLKPMIRSKIT------- 305 Query: 105 ATRHLRGHEPFVQVSWDEALALVAEAILSTAEQHGNQALFSSSYGGWSHAGLMRPQ--VL 162 +P+ +VSWDEA+ A + ++G ++ GG + + ++ Sbjct: 306 --------DPWKEVSWDEAINYAASELKRIQAKYGKDSI-----GGLVSSRCTNEEGYLV 352 Query: 163 QGRLFGLIGGHST-TTGDYSGGASQISLPYVIGDMEVYSPQTSWEVVAAHTDIMVWVGAD 221 Q + G ++ T + L +G E QT V+ +D+++ +GA+ Sbjct: 353 QKLVRAAFGNNNVDTCARVCHSPTGYGLKVTMG--ESAGTQTFESVM--KSDVILVIGAN 408 Query: 222 PIKNNRIEYTVADHQMTENWKKIRARGVKFISINPQYT--ATDELLQAEW-IKIVPNTDT 278 P + V QM ++IR +G K I ++P+ T +QA++ +K+ P ++ Sbjct: 409 PASG----HPVFASQMK---RRIR-QGAKLIVVDPRTTEMVKSPHIQADYHLKLKPGSNV 460 Query: 279 ALFLAMAFHVLSTGRQDQAYLAKYTV--GFERFRDYLLGRDADGSPPKTPEWAAAITGVP 336 A+ A+A +++ ++A FE + +++ P +PE ++GVP Sbjct: 461 AIVNALAHVIITENLHKPDFIAARCEVDSFEEWAEFV------SLPENSPEAMEEVSGVP 514 Query: 337 AAQIRTLAELFSGPQRVQFAGAWSLQRAHHGEMTHWAIINFAAMVGKIGKPGQGVGFSWH 396 AA IR A LF+ + G T I N A G IG+ G GV Sbjct: 515 AADIRGAARLFATGGNAAIYYGLGVTEHAQGSTTVIGIANLAMATGNIGRDGVGVN---- 570 Query: 397 YGGGGMVQSNAIMPVGLSQGRNPVTTRCPASRISEMLLNPGGKYTRD-----------GA 445 P+ +G+N V C L PG ++ D G Sbjct: 571 -------------PL---RGQNNVQGSCDMGSFPHEL--PGYRHVSDSVARAEFEAVWGC 612 Query: 446 T-HSYPDVRL--------------IYNAGNNFLSHQQNTNELIRALNRQVPTIICQDPWW 490 T S P +R+ +Y G + + NT + AL + II QD + Sbjct: 613 TLESEPGLRIPNMFDAAMDGTFMGLYCEGEDIVQSDPNTQHVTAAL-EAMECIIVQDIFL 671 Query: 491 CASARFADIVLPATSELERNDISSGGTYSN--DKIYAMRQVIQP---YGQSLDDLEIFSR 545 +A++A + LP +S LE++ GT++N +I +R+V+ P YG D E+ Sbjct: 672 NETAKYAHVFLPGSSFLEKD-----GTFTNAERRISRVRKVMPPKSGYG----DWEVTQM 722 Query: 546 LAGLMGVGYQFTEGKSIMQILTESFQAAQPTLSFQRFWREGVARLPVPQEMRGWVRHGDF 605 L+ +G + + IM + A PT + F R E+ G ++ Sbjct: 723 LSNALGYPMNYKHPREIM----DEIAALTPTFTGVSFKR--------IDELGGSIQWPCN 770 Query: 606 YRDPEQHP-LHTRS---GKIELYCAQIDSFKLPDCPPMPKYLEPAEFLGNAKPGQVHVVS 661 PE P +HT GK I++ KY E + P + Sbjct: 771 AEAPEGTPTMHTEEFVRGKGRF----INT----------KYFGAGEKVNKKFPLILTT-- 814 Query: 662 PHPWNRVHSQM---AQADVRFEQNVQGRQHVLINSQDAAALDIRDGDLVELSNARGTLIA 718 R+ SQ AQ F + I+ DA I+ D V + + G + Sbjct: 815 ----GRILSQYNVGAQTRRTFNNMWHSEDRLEIHPHDAEERGIKQDDWVGIESRAGQTVL 870 Query: 719 GAAITARIMQGVV 731 A IT RI GVV Sbjct: 871 RADITERIQPGVV 883 >gi|152982608|ref|YP_001352175.1| nitrate reductase catalytic subunit [Janthinobacterium sp. Marseille] Length = 939 Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 117/501 (23%), Positives = 195/501 (38%), Gaps = 55/501 (10%) Query: 117 QVSWDEALALVAEAILSTAEQHGNQALFSSSYGGWSHAGLMRPQ--VLQGRLFGLIGGHS 174 + SW L +A +T HG S G + L+ V GLIG ++ Sbjct: 98 RASWATTLDFLANKFAATIRDHG-----PDSVGFYLSGQLLTEDYYVFNKLAKGLIGTNN 152 Query: 175 TTTGDYSGGASQIS-LPYVIGDMEVYSPQTSWEVVAAHTDIMVWVGADPIKNNRIEYTVA 233 T +S ++ +G +P +E + D++ VG++ + I Y Sbjct: 153 VDTNSRLCMSSAVAGYKQTLG---ADAPPPCYEDID-QADVIFLVGSNTAYAHPIVY--- 205 Query: 234 DHQMTENWKKIRARGVKFISINPQYTATDELLQAE-WIKIVPNTDTALFLAMAFHVLSTG 292 + E+ +K +K I +P+ T D +A+ ++ I+P TD ALF M L Sbjct: 206 --RRIEDARKANP-ALKVIVADPRRT--DTAREADLFLPILPGTDVALFNGMLHICLWED 260 Query: 293 RQDQAYLAKYTVGFERFRDYLLGRDADGSPPKTPEWAAAITGVPAAQIRTLAELFSGPQR 352 D Y+A +T GF + + TP+ A I G+ A + A F + Sbjct: 261 LVDVDYIAAHTEGFAELKQTVR--------EYTPKMVAEICGINEADLMQAARWFGQAKA 312 Query: 353 VQFAGAWSLQRAHHGEMTHWAIINFAAMVGKIGKPGQGVGFSW----HYGGGGMVQSNAI 408 L ++ G + A+IN +IGKPG G FS + GG V A Sbjct: 313 ALSMYCQGLNQSSSGTAKNAALINLHLATHQIGKPGAG-PFSLTGQPNAMGGREVGGLAT 371 Query: 409 MPVGLSQGRNPVTTRCPASR--ISEMLLNPGGKYTRDGATHSYPDVRLIYNAGNNFLSHQ 466 M G NP A+ + + PG +++LI+ N + Sbjct: 372 MLSGHRDLGNPQHRAEIAALWGVDAVPEKPGKSAVEMFEAVRTGEIKLIWIVCTN-PAQS 430 Query: 467 QNTNELIRALNRQVPTIICQDPW-WCASARFADIVLPATSELERNDISSGGTYSND--KI 523 +IR R ++ Q+ + AS +AD++LPA++ E+ GT +N +I Sbjct: 431 MPEQAMIREALRNAELVVVQEAYRTTASCDYADVLLPASTWSEKE-----GTVTNSERRI 485 Query: 524 YAMRQVIQPYGQSLDDLEI---FSR-LAGLMGVGYQFTEGKSIMQILTESFQAAQ----- 574 + V+ +S D EI F+R L +MG +I E ++ + Sbjct: 486 TRFKSVLPKLAESRHDWEIAVEFARKLEAVMGKDKSLFPFAGTEEIWNEHRESTRGRDLD 545 Query: 575 -PTLSFQRFWREGVARLPVPQ 594 LSF+ +G + P P+ Sbjct: 546 ITGLSFKILEEQGPQQWPYPE 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,170,416 Number of extensions: 93668 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 3 Length of query: 888 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 796 Effective length of database: 880,897 Effective search space: 701194012 Effective search space used: 701194012 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)