BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0316.p
         (311 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979936|ref|YP_001354698.1| UDP-3-O-[3-hydroxymyristoyl] N-...   535   e-153

>gi|152979936|ref|YP_001354698.1| UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase [Janthinobacterium sp.
           Marseille]
          Length = 311

 Score =  535 bits (1378), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/311 (81%), Positives = 280/311 (90%)

Query: 1   MLKQRTIKNLVKTTGVGLHSGTKVELTLRPAAPDTGIIFRRIDLDPVVELPMIATGVGDT 60
           MLKQRTIK LVK+ GVGLHSGTKVELTL PA  D GI+FRRIDLDPVVELP  AT VGDT
Sbjct: 1   MLKQRTIKQLVKSVGVGLHSGTKVELTLHPAPVDAGIVFRRIDLDPVVELPAQATIVGDT 60

Query: 61  RMASTLTKDGAKVSTVEHLLSACAGLGIDNLYIDLTAEEIPIMDGSASSFVFLLQQAGLQ 120
           RMASTL K  AKVSTVEHL+SACAGLGIDNLY+DLTAEE+PIMDGSASSFVFLLQQAGLQ
Sbjct: 61  RMASTLQKGEAKVSTVEHLMSACAGLGIDNLYVDLTAEEVPIMDGSASSFVFLLQQAGLQ 120

Query: 121 EQNAPKKFIRVKKPVEVREGRGDKEKWARLEPYDGFRLKFFIEFNHPAVDGTGQVAEVDF 180
           EQ+APKKFIR+KK VEVR+G G++E WARLEPY+GF+LKFFI+FNHPAVDGTGQ AE+DF
Sbjct: 121 EQDAPKKFIRIKKTVEVRQGSGEREIWARLEPYEGFKLKFFIQFNHPAVDGTGQTAEIDF 180

Query: 181 GIDSYVKEIARARTFGFMQDVETLRGMGLARGGSFENAIVMDEYRILNADGLRYDNEFVR 240
             +SYVK++ARARTFGFMQD+ETLRGMGL RGGS ENAIVMDEYRILN DGLRYDNEFVR
Sbjct: 181 SFESYVKDVARARTFGFMQDMETLRGMGLIRGGSLENAIVMDEYRILNTDGLRYDNEFVR 240

Query: 241 HKILDAIGDLYIIGHPLLASYDAHKSGHGLNNLLLRELLSQPDAYEIVSFDKLEQAPQTY 300
           HKILDAIGDLY++GHPL+ASY+AHKSGH LNNLL+R LL QPDAYEIV+F+K+E AP+ Y
Sbjct: 241 HKILDAIGDLYLVGHPLIASYNAHKSGHMLNNLLVRALLEQPDAYEIVTFEKVETAPKDY 300

Query: 301 VMQAQQEWALN 311
             QA  EWAL 
Sbjct: 301 ARQASLEWALT 311


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 749,786
Number of extensions: 32146
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 228
Effective length of database: 914,170
Effective search space: 208430760
Effective search space used: 208430760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)