BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0309.p
         (360 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980501|ref|YP_001354705.1| undecaprenyldiphospho-muramoylp...   536   e-153

>gi|152980501|ref|YP_001354705.1|
           undecaprenyldiphospho-muramoylpentapeptide beta-N-
           acetylglucosaminyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 358

 Score =  536 bits (1380), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/354 (75%), Positives = 300/354 (84%)

Query: 5   RKLLIMAAGTGGHIFPGLAIADTMRARGWQVSWLGTSHGMERELVPRHGVEMDSIVFAGL 64
           ++L+IMAAGTGGHIFPGLAIA+TM+ARGWQVSWLGTSHGMERELVP+ GVEMD I F+GL
Sbjct: 2   KRLVIMAAGTGGHIFPGLAIAETMKARGWQVSWLGTSHGMERELVPKAGVEMDIIEFSGL 61

Query: 65  RGKGLMHTLKGVWRLAASFLHCHAILGRRRPDVVLGMGGYVTVPGGMMARLRGKPLVLVN 124
           RGKGL HT+ G ++L ASF  C +IL RR P +VLGMGGYVTVPGG MA+LRG P+VLVN
Sbjct: 62  RGKGLQHTITGAFKLVASFATCFSILKRRNPGIVLGMGGYVTVPGGWMAKLRGVPVVLVN 121

Query: 125 ADAALLLSNKTLTPMATRVLFGFPADFGKAAGKAEVTGNPVRKEIIALPPPAQRYAGHSG 184
           ADAALLLSNKTL P+A RVLFGFPADFG AA KA VTGNPVR+EII+LP PA+RYA HSG
Sbjct: 122 ADAALLLSNKTLMPVAERVLFGFPADFGPAASKALVTGNPVRQEIISLPAPAERYAQHSG 181

Query: 185 VLKILVVGGSLGAKVLNDNVPAALAKLPAELRPQVTHQSGKQHIAALRAAYEAAGVQAEV 244
            LK+LVVGGSLGAK LND +P ALA LP E RP VTHQSGK++I ALRA Y  AGV AEV
Sbjct: 182 PLKVLVVGGSLGAKALNDAMPLALAMLPPEQRPVVTHQSGKKNIDALRANYAQAGVDAEV 241

Query: 245 VDFIDDMPRRYAQADLVICRAGAITVSELTAAGVASVLVPLAVSTTSHQIDNARWMAENK 304
           +DFI+DMPRRYA+ADLVICRAGAITVSELTAAGVASVLVPL VSTT+HQ DNA WM +  
Sbjct: 242 LDFINDMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLLVSTTTHQRDNALWMEKQN 301

Query: 305 AAIHLPQRELTPEHLAGLLQKLDRAACQEMAQAAYEQGRRDANEAIARVLEGLV 358
           AAIHLPQ EL+ + LA LLQ + R  C++MA+AAY  GRRDAN AIA VLE LV
Sbjct: 302 AAIHLPQSELSAQGLAELLQGMTREKCKQMAEAAYANGRRDANAAIADVLEKLV 355


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 888,117
Number of extensions: 37892
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 276
Effective length of database: 910,473
Effective search space: 251290548
Effective search space used: 251290548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)