BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0307.p (700 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D... 451 e-128 >gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janthinobacterium sp. Marseille] Length = 498 Score = 451 bits (1161), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/331 (67%), Positives = 265/331 (80%), Gaps = 7/331 (2%) Query: 370 MPQAWVLELSSFQLHTTHSLQAHAATVLNLTQDHLDWHGSMEHYAADKARIFGQDTVRVL 429 +PQ WVLELSSFQLHTT+SLQA ATVLNLTQDHLDWHG M YA DKARIFG +T+RVL Sbjct: 171 LPQVWVLELSSFQLHTTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFGSNTIRVL 230 Query: 430 NRDDALVMEMASTAAPLSTFGLDEPDTPNSFGLVNDNGMLWLANAFVHEDDEVPEGKRRR 489 NRDDALVM+M+S + + TFG DE + + FGLV++NGM WL+ A ++E P+ KRR+ Sbjct: 231 NRDDALVMQMSSPLSKVITFGADEAEQADCFGLVDENGMRWLSVAV---EEEEPQKKRRK 287 Query: 490 KQKDMLPPPVTVKRLMPADALKIRGAHNAMNALAALALCRAIDLPMAPLLHGLREYTGEP 549 K D + V+ +LMP DALKIRG HNA+NAL+ALALCRAI LP A LLHGLR+Y GEP Sbjct: 288 K--DNVELAVSTNKLMPVDALKIRGQHNAINALSALALCRAIGLPFAQLLHGLRDYHGEP 345 Query: 550 HRVELVGVIQEVEYYDDSKGTNVGATVAALNGLGLG--GRPNRIVLIAGGDGKGQDFSPL 607 HRVE V I V+YYDDSKGTNVGATVAALNGLG G N +VLIAGGDGKGQDFSPL Sbjct: 346 HRVEHVMTIGGVDYYDDSKGTNVGATVAALNGLGASQDGASNHLVLIAGGDGKGQDFSPL 405 Query: 608 DLPVQKYARAVLLIGRDAPAVRTALADSGVELIDCASLEQAVEQAGQIAKAGDIVLLSPA 667 PV KYARAV+LIG+DA +R AL +GV++I+C +LE+A ++A ++A++GD VLLSPA Sbjct: 406 ADPVAKYARAVILIGKDADNIRAALQATGVDMINCTTLEEATQKAAELAQSGDAVLLSPA 465 Query: 668 CASLDMFRNYAHRAEVFVDAVHELALSRGEV 698 CASLDMF+NYAHRA+VFVD V E+ LSRGEV Sbjct: 466 CASLDMFKNYAHRAQVFVDEVREIGLSRGEV 496 Score = 239 bits (610), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 124/184 (67%), Positives = 148/184 (80%), Gaps = 7/184 (3%) Query: 1 MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRSEAALAERLAALRADAPEAQAVL 60 MNY+GKHVLVLGLGESGLAMA+WLV+CGAS+RVADTR + +RL LR AP+A+ V Sbjct: 1 MNYAGKHVLVLGLGESGLAMAQWLVHCGASLRVADTREQP---DRLPQLRGIAPQAEFV- 56 Query: 61 GQPLAAALLDGIDFVAVSPGLAPEGELAPLMPVIAERGLPLWGEIELFAQALLALREETL 120 G P A+LLDG+DFVAVSPGL P ELA ++P AE+ +P+WGEIELFAQAL AL+E+ Sbjct: 57 GGPFDASLLDGVDFVAVSPGLMPARELAEIIPAAAEKEIPVWGEIELFAQALAALKEDKG 116 Query: 121 YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIKD---QVFL 177 Y PKV+AITGTNGKTTVT L GLLCQRAGL+VQVAGNISPAALD L + + D QV++ Sbjct: 117 YAPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNISPAALDKLHQVLTDDQLPQVWV 176 Query: 178 AELA 181 EL+ Sbjct: 177 LELS 180 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.130 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,264,274 Number of extensions: 44939 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 2 Length of query: 700 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 610 Effective length of database: 888,291 Effective search space: 541857510 Effective search space used: 541857510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 133 (55.8 bits)