BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0306.p
         (389 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979913|ref|YP_001354708.1| phospho-N-acetylmuramoyl-pentap...   670   0.0  

>gi|152979913|ref|YP_001354708.1|
           phospho-N-acetylmuramoyl-pentapeptide-transferase
           [Janthinobacterium sp. Marseille]
          Length = 389

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/389 (86%), Positives = 366/389 (94%)

Query: 1   MLVWLAQNFQQDFGFLRLFNFITFRAVFATLTALLIGMIAGPAVIRMLTRMKVGQAVRTD 60
           ML+WLAQ FQ + G LR+FNFITFRAVFATLTAL+IG++ GPAVIRMLTR+KVGQAVRTD
Sbjct: 1   MLLWLAQYFQDELGPLRVFNFITFRAVFATLTALVIGLVTGPAVIRMLTRLKVGQAVRTD 60

Query: 61  GPQTHLIKSGTPTMGGVLILIGIGISTLLWADLSNRFVWIVLIVTLGFGAIGWVDDYRKV 120
           GPQTHLIKSGTPTMGGVLIL+ IGISTLLW DLSNRF+W+VLIVTLGFGA+GWVDDYRKV
Sbjct: 61  GPQTHLIKSGTPTMGGVLILVSIGISTLLWTDLSNRFIWVVLIVTLGFGAVGWVDDYRKV 120

Query: 121 VYRDPEGMRSREKYFWQSLIGLVAAFYLAFSVSEVSNMKVFDLFVAWVRSGFSLDLPPKA 180
           VY+DP+GM SREKY WQS+IGL AA YLAFSVS  SN +  DLF+AWV+SGFS+DLPPKA
Sbjct: 121 VYKDPKGMASREKYMWQSIIGLFAAIYLAFSVSAPSNSQFLDLFIAWVQSGFSMDLPPKA 180

Query: 181 DLIVPFFKTVSYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTVLVGAALGLFAY 240
           DLIVPFFKT+SYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTV+VG ALGLFAY
Sbjct: 181 DLIVPFFKTISYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTVMVGTALGLFAY 240

Query: 241 LTGNAAYAKYLFIPHIPGAGELLIFCGAMGGAGLAFLWYNAYPAQVFMGDVGALALGGAL 300
           LTG+A Y+KYLFIPHIPGAGEL+IFCGAM GAGLAFLW+NA+PAQVFMGDVGALALGGAL
Sbjct: 241 LTGSANYSKYLFIPHIPGAGELIIFCGAMAGAGLAFLWFNAHPAQVFMGDVGALALGGAL 300

Query: 301 GTIAVIVRQEIVLFIMGGIFVVETLSVMIQVAYFKYTKKRFGTGRRVLLMAPLHHHYEQK 360
           GTIAVIVRQE+VLFIMGGIFVVETLSVM+QVAYFKYTK R G G+R+LLMAPLHHH+EQK
Sbjct: 301 GTIAVIVRQEVVLFIMGGIFVVETLSVMLQVAYFKYTKMRTGIGKRILLMAPLHHHFEQK 360

Query: 361 GWKETQVVVRFWIITMMLVLLGLSTLKLR 389
           GWKETQVVVRFWIITMMLVL GLSTLKLR
Sbjct: 361 GWKETQVVVRFWIITMMLVLFGLSTLKLR 389


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.145    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 883,666
Number of extensions: 35918
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 304
Effective length of database: 906,776
Effective search space: 275659904
Effective search space used: 275659904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)