BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0299.p
         (115 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( h...   108   8e-26
gi|152980190|ref|YP_001353183.1| integration host factor alpha-s...    64   3e-12

>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta (
           histone-like DNA-binding protein) [Janthinobacterium sp.
           Marseille]
          Length = 90

 Score =  108 bits (270), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query: 22  VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81
           +NK+EL+D IA   +ISKAAA RALDSVI  +   + K  +V LVGFG+FS GKRAARTG
Sbjct: 1   MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60

Query: 82  RNPQTGEEIKIAAATTVKFSAGKAFKEAVN 111
           RNP+TGE IKI AA   KF  GKA K+AVN
Sbjct: 61  RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|152980190|ref|YP_001353183.1| integration host factor
           alpha-subunit [Janthinobacterium sp. Marseille]
          Length = 165

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 16  SERNFK-VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTG 74
           +E+N   + K+EL +++     ++K  A+  +++  + I  A+ +G++V+L GFG+F   
Sbjct: 58  AEKNLPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLR 117

Query: 75  KRAARTGRNPQTGEEIKIAAATTVKFSAGKAFKEAV 110
            +  R GRNP+TGEEI I A   V F A +  K  V
Sbjct: 118 DKPQRPGRNPKTGEEIPITARRVVTFHASQKLKGMV 153


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.128    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 204,153
Number of extensions: 6586
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 43
Effective length of database: 954,837
Effective search space: 41057991
Effective search space used: 41057991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)