BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0297.p (421 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 251 5e-68 gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 230 1e-61 gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 211 8e-56 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 251 bits (642), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 156/426 (36%), Positives = 227/426 (53%), Gaps = 23/426 (5%) Query: 1 MHICVLGAGVIGVTTAYRLLQDGHQVSLIDAHEHPGAG--TSYGNGAQLSYSYVAPLADP 58 M + VLG+G+IG ++A+ L + GH+V++I+ PGA TS+ NG Q+S S+ P A+P Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIE--RQPGAAQETSFANGCQISVSHAEPWANP 58 Query: 59 SVWSKWAYYLFSKDSPLTIRPTADAAQYRWLLGFLRCCNSPRVRQTTIDLLQLAFYSRDQ 118 + K +L +D+PL R + Q++W L FLR C R ++ + YSR Sbjct: 59 AAPMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQT 118 Query: 119 LNQWNERLQLSFDYQRSGKLVMFTDVQGLDAAARQVQFQAQYGCKQEVLSAADCLRIEPA 178 L +++D SG L +TD + D + + GC ++ +SA + +RIEPA Sbjct: 119 LQAVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPA 178 Query: 179 LAGSQRAWTGGVYTPSEAAGDCPQFCRAL-VNAMQADPNFRFIGNTRVTAVRRAGRALRA 237 LA + GG +T ++ +GD +F L A +A +F++ NT VT + G A Sbjct: 179 LASIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQY--NTSVTRLLTEGSGANA 236 Query: 238 VQAG---------EQWLEADRFVLALGADSTDFARQLDLRLPLYPLKGYSITVPLEDEAS 288 G + L AD +V+A+G+ S + R L + L +YP KGYS T + D Sbjct: 237 KITGVEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDP-- 294 Query: 289 RAAAPQVSITDIARKIVYARLGQRLRVAGRIELVGQDRRIPQAAIDQLKHGMRELFP-AC 347 AAAP VS+TD K+V +RLG RLRVAG EL G R + A + + RELFP AC Sbjct: 295 -AAAPTVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDAC 353 Query: 348 TLGEEATLSPWMGFRPATPSGVPIVGASPVDNLYLNLGQGALGWTLACGSAALLADQIAG 407 W G RP TPS VP +G + NLYLN G G LGWT+ CGS LA+ ++G Sbjct: 354 DYDNPVY---WTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSG 410 Query: 408 RKRAID 413 + +D Sbjct: 411 LQPDLD 416 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 144/427 (33%), Positives = 215/427 (50%), Gaps = 21/427 (4%) Query: 1 MHICVLGAGVIGVTTAYRLLQDGHQVSLIDAHEHPGAG--TSYGNGAQLSYSYVAPLADP 58 M + VLG+G+IG +A+ L + GH+V++++ PGA TS+ NG Q+S S+ P A+ Sbjct: 63 MKVIVLGSGIIGTASAWFLNKAGHEVTVVE--RQPGAAQETSFANGCQISVSHATPWANK 120 Query: 59 SVWSKWAYYLFSKDSPLTIRPTADAAQYRWLLGFLRCCNSPRVRQTTIDLLQLAFYSRDQ 118 L +D+PL R A+ Q++W + FLR C R ++ +A YSR Sbjct: 121 GAPLTILKALGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYSRQT 180 Query: 119 LNQWNERLQLSFDYQRSGKLVMFTDVQGLDAAARQVQFQAQYGCKQEVLSAADCLRIEPA 178 L + + + +D G L +T + D + + GC +E L+ +++EPA Sbjct: 181 LQAVRQEVDIDYDCLTRGILHFYTQQKDFDESLASASVMRELGCPREPLTVEQAVQLEPA 240 Query: 179 LAGSQRAWTGGVYTPSEAAGDCPQFCRALVNAMQADPNFRFIGNTRVT---------AVR 229 LA ++ G +T ++ +GD +F L Q + F NT VT A R Sbjct: 241 LAHIRKQIVGADFTETDESGDIYKFTTGLARKAQ-ERGVHFEFNTTVTRLITEGTGAAAR 299 Query: 230 RAGRALRAVQAGEQWLEADRFVLALGADSTDFARQLDLRLPLYPLKGYSITVPLEDEASR 289 G + + L AD FV+A+G+ S + L + L +YP KGYS T P+ + Sbjct: 300 VTGVEVINPEGRHMSLHADAFVMAMGSFSVPMLKPLGINLMIYPGKGYSATYPI---VNP 356 Query: 290 AAAPQVSITDIARKIVYARLGQRLRVAGRIELVGQDRRIPQAAIDQLKHGMRELFP-ACT 348 AP VS+ D K+V +RLG +LRVAG E G R + + + RELFP AC Sbjct: 357 DLAPAVSLIDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPDACD 416 Query: 349 LGEEATLSPWMGFRPATPSGVPIVGASPVDNLYLNLGQGALGWTLACGSAALLADQIAGR 408 A W G RP TPS VP +G + NLYLN G G+LGWT+ CGS +AD I+G Sbjct: 417 YSNPAY---WAGLRPLTPSNVPYIGKTKFSNLYLNTGHGSLGWTMGCGSGRAIADIISGV 473 Query: 409 KRAIDDA 415 + ++ A Sbjct: 474 QPEVNFA 480 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 211 bits (536), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 135/414 (32%), Positives = 210/414 (50%), Gaps = 11/414 (2%) Query: 1 MHICVLGAGVIGVTTAYRLLQDGHQVSLIDAHEHPGAGTSYGNGAQLSYSYVAPLADPSV 60 M + V+GAGVIGV+TAY L + GH+V +I+ H + SYG+ L+ S +AP A P V Sbjct: 1 MQVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGV 60 Query: 61 WSKWAYYLFSKDSPLTIRPTADAAQYRWLLGFLRCCNSPRVRQTTIDLLQLAFYSRDQLN 120 + YL ++P+ + + W+ +++ + R R + ++ FYSRD + Sbjct: 61 PRSFLSYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQ 120 Query: 121 QWNERLQLSFDYQRSGKLVMFTDVQGLDAAARQVQFQAQYGCKQEVLSAADCLRIEPALA 180 ER QL ++ Q G L +F + L A + +++ ++L A ++ AL Sbjct: 121 MLRERHQLDYE-QTPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVDSAL- 178 Query: 181 GSQRAWTGGVYTPSEAAGDCPQFCRALVNAMQADPNFRFIGNTRVTAVRRAGRALRAVQA 240 G +Y P + AG+CP F R + QA F+ ++V ++ + R + +Q Sbjct: 179 NPNTPLAGALYLPEDEAGNCPLFTRQIRAQAQA-MGVEFLFGSKVKSIEESKRGVH-LQI 236 Query: 241 GEQWLEADRFVLALGADSTDFARQLDLRLPLYPLKGYSITVPLEDEASRAAAPQVSITDI 300 + A+ V+A GADS L L LPL +K Y T + + S AP ++ D Sbjct: 237 DDHSFSAECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFES---APVAAVVDE 293 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRRIPQAAIDQLKHGMRELFP-ACTLGEEATLSPWM 359 A KI R+G+R+RVAG EL + + Q A++ L + FP AC T + W Sbjct: 294 AYKIAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYN---TAAFWS 350 Query: 360 GFRPATPSGVPIVGASPVDNLYLNLGQGALGWTLACGSAALLADQIAGRKRAID 413 G A P G P++GA V N+YLN+G G+ GW +A GS +LAD I+GR ID Sbjct: 351 GSSLALPDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDID 404 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,014,759 Number of extensions: 42898 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 3 Length of query: 421 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 335 Effective length of database: 903,079 Effective search space: 302531465 Effective search space used: 302531465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)