BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0293.p (335 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981244|ref|YP_001351942.1| hypothetical protein mma_0252 [... 383 e-108 gi|152981199|ref|YP_001351939.1| hypothetical protein mma_0249 [... 232 3e-62 gi|152982773|ref|YP_001352426.1| aldo/keto reductase family oxid... 137 8e-34 gi|152981140|ref|YP_001355236.1| aldo/keto reductase family oxid... 99 3e-22 >gi|152981244|ref|YP_001351942.1| hypothetical protein mma_0252 [Janthinobacterium sp. Marseille] Length = 337 Score = 383 bits (984), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/334 (56%), Positives = 232/334 (69%) Query: 1 MHYRRLGKSNLKVSALCLGSMMFGDQTDLQESGRIIASAREHGVNFIDTADVYTKGKSEE 60 M Y LGKS LKVS LCLG+MMFG +D Q S +II A EHG+NFIDTAD+YT G+SE Sbjct: 1 MQYENLGKSGLKVSRLCLGTMMFGGASDEQTSHQIIQHAHEHGINFIDTADIYTGGESER 60 Query: 61 IVGKLLAGQRHEWVLASKLGNAMSGKPNESHYSRSWIVRETENSLKRLDTDYLDILYMHR 120 +VGK +A QR +WVLA+K+GN PNE SR I++ E SL+RL TDY+DI Y+HR Sbjct: 61 VVGKGIAAQRDKWVLATKVGNGSDKWPNEKGLSRRRIIQAVEQSLQRLGTDYIDIYYLHR 120 Query: 121 DYQDENLEEAVQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNL 180 L E V+ALGDLI GKIR FG+SNF W++AE+V L ++ V P+V QPYYN Sbjct: 121 PDPATPLHETVRALGDLIAQGKIRYFGLSNFSAWQLAEVVHLSKELGVAPPIVSQPYYNA 180 Query: 181 LNRQPEVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPPEDTRAGRGDKRMMETEFR 240 NR PEVE LPAC +GLGVV YSP+ARGVLTGKY PG +P +++R GRGDKR ++TE+R Sbjct: 181 ANRMPEVEHLPACHFHGLGVVSYSPLARGVLTGKYLPGNEPDQNSRVGRGDKRALQTEWR 240 Query: 241 EESLLIAQRLQQHCEVRGIKLGQFATAWVLANAAISSVIAGPRTLAQMEDYYDAAELQIT 300 ES+ +AQ LQ+H +V G + A AWVL N ++SVI GPRT Q + Y + T Sbjct: 241 PESIALAQALQEHAQVHGTTNIELALAWVLNNRLVTSVIGGPRTFEQWQAYLNGLNYHFT 300 Query: 301 AEEEALVDSLVRPGHASTHGYNDPNYPFFGRMVR 334 E+EAL D LV PGH ST GY DP YP GR+ R Sbjct: 301 PEDEALFDRLVPPGHPSTPGYTDPEYPVIGRVPR 334 >gi|152981199|ref|YP_001351939.1| hypothetical protein mma_0249 [Janthinobacterium sp. Marseille] Length = 337 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 192/315 (60%), Gaps = 4/315 (1%) Query: 3 YRRLGKSNLKVSALCLGSMMFGDQTDLQESGRIIASAREHGVNFIDTADVYTKGKSEEIV 62 YR G++ +K+S L LG MMFG++T+L ++ RII A + G+N IDTA+VY +G+SEE Sbjct: 6 YRNFGRTGVKISPLTLGCMMFGNKTELDDTVRIIDRAIDAGINIIDTANVYARGRSEEFT 65 Query: 63 GKLLA--GQRHEWVLASKLGNAMSGKP-NESHYSRSWIVRETENSLKRLDTDYLDILYMH 119 G+ L G+R + LASK+ M N SR I+++ E+SL+RL TDYLD+ +H Sbjct: 66 GEALKRNGKRKDIFLASKVHLPMHDTDGNLRGSSRRHIIQQVEDSLRRLQTDYLDLYQIH 125 Query: 120 RDYQDENLEEAVQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYN 179 R ++E ++AL DL+++GK+R G + F GW++ E + ++ + + QP YN Sbjct: 126 RPEPTTAIDETLRALDDLVKSGKVRYIGSTTFAGWQVVEALWASKELGLNRFVSEQPPYN 185 Query: 180 LLNRQPEVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPPEDTRAGRGDKRMMETEF 239 LL+R+ E E+LP +GL V+P+SPI G+L+GKY+ GQ P D+R + M F Sbjct: 186 LLDRRIERELLPVAETFGLAVIPWSPIGGGLLSGKYRKGQPLPLDSRYTNPNP-MQARRF 244 Query: 240 REESLLIAQRLQQHCEVRGIKLGQFATAWVLANAAISSVIAGPRTLAQMEDYYDAAELQI 299 + + + L + +G+ L Q A AWV ++S I GPRTL Q+ED A E+++ Sbjct: 245 VDRVFDVIEPLSELAAEKGVPLSQLALAWVAQQRGVTSAITGPRTLEQLEDALQAIEVKL 304 Query: 300 TAEEEALVDSLVRPG 314 T E+ +D+++ PG Sbjct: 305 TPEDLQRIDAIIPPG 319 >gi|152982773|ref|YP_001352426.1| aldo/keto reductase family oxidoreductase TAS [Janthinobacterium sp. Marseille] Length = 349 Score = 137 bits (345), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 176/346 (50%), Gaps = 45/346 (13%) Query: 1 MHYRRLGKSNLKVSALCLGSMMFGDQTDLQESGRIIASAREHGVNFIDTADVY------- 53 M Y++LGK+++KVS + LG+M +G+Q E+ + A GVN ID A++Y Sbjct: 1 MKYQQLGKTDIKVSNIALGTMTWGEQNTEAEAHAQLDMAIAAGVNLIDAAEMYPVPPKPE 60 Query: 54 TKGKSEEIVGKLL--AGQRHEWVLASKLGNA--MSGKPN-----ESHYSRSWIVRETENS 104 T+G +E +G L +G+R + ++A+K + +P ++ + R+ + + Sbjct: 61 TQGLTERYLGTWLKKSGKRDQLIIATKAAGPARLPHQPQHVRHGKTSFDRASLTDALHGN 120 Query: 105 LKRLDTDYLDILYMH--------------RDYQDEN---LEEAVQALGDLIRAGKIRGFG 147 L+RL TDY+D+ +H + DE+ + E + L D ++ GKIR G Sbjct: 121 LERLQTDYIDLYQLHWPDRSVNIFGRQNYTHFPDEDTVPIAETLSVLADFVKQGKIRYIG 180 Query: 148 VSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNLLNRQPEVEILPACAHYGLGVVPYSPIA 207 VSN W +A+ +R E+ N+P + Q Y+L+NR E+ + +G++ YSP+A Sbjct: 181 VSNETPWGLAQFLRASEQLNLPRIVSIQNPYSLVNRYFEIALSEFSHQEQIGLLAYSPLA 240 Query: 208 RGVLTGKYQPGQKPPEDTRAGRGDKRMMETEFREESLLIAQRLQQHCEV---RGIKLGQF 264 GVL+GKY G +P + G + E R ++ + ++ + + G+ Q Sbjct: 241 FGVLSGKYLHGARPAD------GRITLFERFVRYKAPQVETAVEAYVALARKHGLDPAQM 294 Query: 265 ATAWVLANAAISSVIAGPRTLAQMEDYYDAAELQITAEEEALVDSL 310 A A+V ++S I G TL Q++ D+ L++ +EA+++ + Sbjct: 295 ALAYVNTRPFLTSTIIGATTLGQLQSNLDSINLEL---DEAVLNGI 337 >gi|152981140|ref|YP_001355236.1| aldo/keto reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 277 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/310 (32%), Positives = 139/310 (44%), Gaps = 55/310 (17%) Query: 9 SNLKVSALCLGSMMFGDQTDLQESGRIIASAR---EHGVNFIDTADVYTKGKSEEIVGKL 65 S L V L G+ GD+ IAS R + G+ IDTA++Y G SE++VG+ Sbjct: 8 SGLAVPVLGQGTWYMGDEA--HRRADEIASLRLGLDLGMTLIDTAEMYGDGASEKLVGEA 65 Query: 66 LAGQRHEWVLASKLGNAMSGKPNESHYSRSWIVRETENSLKRLDTDYLDILYMHRDYQDE 125 +AG+R E L SK+ S+ SRS + E SL+RL TD +D+ +H + Sbjct: 66 IAGRRDEVFLVSKV--------LPSNASRSGTIAACERSLRRLGTDCIDLYLLHWRGR-T 116 Query: 126 NLEEAVQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNLLNRQP 185 E + A L AGKIR +GVSN + EI R + + Q YNL R Sbjct: 117 PFAETIAAFEALQDAGKIRHWGVSNMDVDDMREIARAPGGDAMA---TNQVLYNLTRRGI 173 Query: 186 EVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPPEDTRAGRGDKRMMETEFREESLL 245 E ++LP GL ++ YSPI +G LT + P E L Sbjct: 174 EFDLLPQAQARGLPLMAYSPIEQGRLT------EYP--------------------EVLD 207 Query: 246 IAQRLQQHCEVRGIKLGQFATAWVLANAAISSVIAGPR--TLAQMEDYYDAAELQITAEE 303 IA R G+ Q A AWVL VIA P+ T + + A +LQ+TAE+ Sbjct: 208 IADR-------HGVTPAQVALAWVLRQ---EGVIAIPKASTPEHVRENRAALDLQLTAED 257 Query: 304 EALVDSLVRP 313 +D + P Sbjct: 258 LEELDDMFPP 267 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 808,355 Number of extensions: 33472 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 4 Length of query: 335 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 251 Effective length of database: 910,473 Effective search space: 228528723 Effective search space used: 228528723 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)