BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0291.p (337 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981603|ref|YP_001353709.1| LysR family transcriptional reg... 282 2e-77 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 194 6e-51 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 189 2e-49 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 186 2e-48 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 185 3e-48 >gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 282 bits (722), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 132/294 (44%), Positives = 195/294 (66%), Gaps = 2/294 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 MDRFQ M++F +++ SFT+AA++L LPR TVT + LE L RLLNRTTR ++ T Sbjct: 1 MDRFQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTL 60 Query: 61 DGAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPD 120 DG AYY RCVR+L D++E + +FRN P+G LR+ V G++ L+P L F+ +YP Sbjct: 61 DGDAYYTRCVRLLTDIEEADGAFRNT--APKGLLRVGVQGTVAAHFLVPTLPAFFARYPG 118 Query: 121 IELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 180 +EL M DR VDLV+E +DCV+R G QDSS++ARRI + V+CA+P+YL R+G P Sbjct: 119 MELHMDESDRLVDLVREGIDCVLRGGTPQDSSLIARRIAMLEQVSCASPAYLARYGQPRN 178 Query: 181 LDDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQ 240 ++DL +HKAV+Y SS +G+ +F+V+G + + + +SV Y CAL G G+VQ Sbjct: 179 IEDLTKHKAVNYISSASGKPFPLEFMVNGRMQSIVLPTAISVTGTKVYTGCALAGLGIVQ 238 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELF 294 P Y + + + +GRL ++L P +P+SV+Y NR LS ++R F +W+ ++F Sbjct: 239 MPRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIRVFSEWLQDIF 292 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 194 bits (493), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 164/292 (56%), Gaps = 5/292 (1%) Query: 6 AMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTPDGAAY 65 ++++F +A SFT AA+ + V+ I LE+ L VRL RTTR+I LT G Y Sbjct: 12 SIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY 71 Query: 66 YERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPDIELLM 125 +E+C LA + + E+ P G LRI VP G LLP L +F +YPD+++ + Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 126 GMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHTLDDLQ 185 + +R +D +EA D IR DS+++AR++ + V AAPSYL+R G P TL+DLQ Sbjct: 132 HISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 186 QHKAVHYFSSRTGRTIDWDF----VVDGVSREVKMDGKLS-VNDADAYVECALQGFGMVQ 240 +H+ + + TGR I W F V G + ++ +G S D V A G G+VQ Sbjct: 192 KHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGLVQ 251 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAE 292 ++V + EGRLVE+L Q+ P ++Y H RHLS +VRAFVD++ E Sbjct: 252 TYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLME 303 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 1/296 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 M+ + F+ +V S A L + VT + LE L VRLLNRTTR +S+T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 DGAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPD 120 +G Y RIL +++E E++ P+G LRI+ GR + P + DF KYP+ Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 IELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 180 IE+ + + DRP +L+ +A D IRIG++ D+ ++AR+I + + CAAP+Y++RHG P Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSV 180 Query: 181 LDDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQ 240 DLQ+ + + W +K+ G LS ND + + AL G G++ Sbjct: 181 PRDLQKLQCI-VLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILM 239 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFAT 296 + V ++ GRLVEVL+ W P I VY +LS KV AFVD+V+ FA+ Sbjct: 240 RSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFAS 295 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 161/297 (54%), Gaps = 7/297 (2%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 MD + F+ +V S AA L + +V+ + G+ES L+VRLLNRTTRRISLTP Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 DGAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPD 120 +G Y R++A+++ EQ +G L++ GR + P L F YP+ Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 IELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 180 +E+ + + DRPV+LV++ D IR GQ+ D+ + AR+I + + CA+P+YL++HG P Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLV 180 Query: 181 LDDLQQHKAVHYFSSRTGRTI--DWDFVVDGVSRE-VKMDGKLSVNDADAYVECALQGFG 237 DLQQH + R I W F G+ +E VK+ G LS ND + AL G G Sbjct: 181 PRDLQQHNCILL---RESDEIYGSWHF-SSGIKQETVKVRGALSANDGECATSWALDGQG 236 Query: 238 MVQAPLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELF 294 +V + V ++ GRL VL +W+ I +V+ HLS K RA VD++ + F Sbjct: 237 IVVRSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAF 293 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 185 bits (470), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 164/288 (56%), Gaps = 2/288 (0%) Query: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTPD 61 DRF++M + VVDA SF+ AA L +P TV+ I LE++L+ R+L R+TR++S+T Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 62 GAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPDI 121 G AY C RIL +VDE E++ P+G L I P GR ++P + F YPDI Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 122 ELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHTL 181 + + + D V L++E VD +R+G+L DS+MVA RIGT V CA+P+YL+++G P Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKKP 182 Query: 182 DDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQA 241 DDL +H+ + + + W +G V + ++ VN A+A +E A G+ Sbjct: 183 DDLSKHQCITFDGLMAPKL--WQLCENGREINVPVFSRVVVNTAEAAIEAAESDIGITSV 240 Query: 242 PLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDW 289 Y + + + +L VL +++ PI++V+ L KVRAF+D+ Sbjct: 241 LCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLDY 288 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 738,693 Number of extensions: 29308 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 28 Length of query: 337 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 253 Effective length of database: 910,473 Effective search space: 230349669 Effective search space used: 230349669 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)