BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0289.p (398 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 375 e-105 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 153 2e-38 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 136 2e-33 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 115 4e-27 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 88 9e-19 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/383 (53%), Positives = 271/383 (70%), Gaps = 4/383 (1%) Query: 10 RFALTATVLAVIALSVGGAISVVGLSANATTAPTAAAAGAPVDVAEVVQRQIIDWQSYSG 69 RF+ +A +AV L + GA + V L+ A AA A V VA V++R + +W +SG Sbjct: 8 RFSRSAIAIAVGVLLIVGA-ATVSLTGRAEKTQAAAPAAVSVTVASVLERSVTEWDDFSG 66 Query: 70 RIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAEVARAEAQLAGAEAR 129 R+EAV+RVE+RP + GT+ AVHF+DG LVKKG LLFTIDPRPY+AE+ARAEA AGA+AR Sbjct: 67 RVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAGAQAR 126 Query: 130 AGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLNLEYTRITA 189 ++L R +RLL + A+A+R+ + ++NA +EA AN+ A AA+ ARLNL+YT ITA Sbjct: 127 LALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQYTEITA 186 Query: 190 PVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSFLKYVNPARAAG--- 246 PVSGR+SRAE+TVGN+V G LTT+VSV+ VY +F++DE ++++Y Sbjct: 187 PVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNFEIDEPTYIRYAGNGTVGNSGV 246 Query: 247 TTVPVELGLANEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARVRLGG 306 + +PV +GL +E+GY R G V S DNRLDT SGTIRVRA+F+N DG L PG+YARVR G Sbjct: 247 SKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGMYARVRTGD 306 Query: 307 GSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDGLVVIEKGLQPGERIV 366 + A+LID+KA+GTDQDK++VMV +N +YR V +G DGL ++ GLQ ERIV Sbjct: 307 ANAKNALLIDDKAVGTDQDKKYVMVVSADNKVTYRPVSLGPIVDGLRIVRSGLQKDERIV 366 Query: 367 VNGLQRIRPGDAITPTVVPMQAQ 389 VNGLQRIRP D +TP VV M A+ Sbjct: 367 VNGLQRIRPNDTVTPEVVKMDAR 389 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 176/328 (53%), Gaps = 25/328 (7%) Query: 69 GRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAE-------VARAEA 121 GR+E++ EVR V G + F++G+ VK G LL+ IDP +A VAR EA Sbjct: 56 GRMESIRVAEVRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEA 115 Query: 122 QLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLN 181 LA AE +A R + L+ NA++K+++++ A ++A+A++A+A+AA ARL+ Sbjct: 116 TLATAEQKA-------KRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLS 168 Query: 182 LEYTRITAPVSGRISRAEVTVGNVVNPGAGN-APLTTLVSVAKVYASFDVDEQSFLKYVN 240 L Y +T+P+SGRI RA VT G +V G G+ PL + + +Y + LK Sbjct: 169 LGYASVTSPISGRIGRALVTEGALV--GQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKR 226 Query: 241 PA-----RAAGTTVPVELGLANEDG--YSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQ 293 ++AG ++ L +DG Y R G++ D +D +SG++ +RA N DG Sbjct: 227 AMDEGKLKSAGKGA-AKVTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGL 285 Query: 294 LVPGLYARVRLGGGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDGLV 353 L+PG+Y R R+ A+ + ++A+ VMV + + R V G+ Sbjct: 286 LLPGMYVRARIEQAVDENAITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTAW 345 Query: 354 VIEKGLQPGERIVVNGLQRIRPGDAITP 381 +I GL+ G++++V GLQ+++PG + P Sbjct: 346 IITDGLKEGDQVIVEGLQKVQPGATVKP 373 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 160/327 (48%), Gaps = 2/327 (0%) Query: 50 PVDVAEVVQRQIIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDP 109 PV V E ++ I + G I A + VR V G L ++FK+G V+ G LL IDP Sbjct: 70 PVSVQEARRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDP 129 Query: 110 RPYEAEVARAEAQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVA 169 R ++A + +AE LA +A+ DLAR + LL +AI K+ + ++ R+ V Sbjct: 130 RAFQATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTVK 189 Query: 170 AARAALRAARLNLEYTRITAPVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFD 229 + + + +A+L L YTR+TAP++GR+ + +GNVV P N + + + F Sbjct: 190 SDQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNG-VVIITQTRPIALVFS 248 Query: 230 VDEQSFLKYVNPARAAGTTVPVELGLANEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDN 289 V + R A TV VE G+V +VDN +D + TI+V+A+F N Sbjct: 249 VPSANVPAITARLR-ANETVAVEAWDRTGKTKLATGQVATVDNAIDVTTDTIKVKALFPN 307 Query: 290 ADGQLVPGLYARVRLGGGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGH 349 D L P V + + + + A+ +V V + ++ S R V GA Sbjct: 308 LDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVVNADSTVSTRVVKPGAID 367 Query: 350 DGLVVIEKGLQPGERIVVNGLQRIRPG 376 G + IE L+ GE++V++G R+R G Sbjct: 368 SGWMAIEAKLEAGEKVVIDGTDRLREG 394 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 157/314 (50%), Gaps = 11/314 (3%) Query: 68 SGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAEVARAEAQLAGAE 127 +G + AV V+VRP V + +H K+G VK G LLFT+D R ++ VA+A A+LA A+ Sbjct: 58 NGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDERSDQSNVAKASAELAAAQ 117 Query: 128 ARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLNLEYTRI 187 A L R Q LL N +++ + +N A +AA++++ + L +I Sbjct: 118 AELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRANQAAIQSSSVALSDNQI 177 Query: 188 TAPVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSF--LKYVNPARAA 245 A +SGRI V G++ P + T+V + + SF + E+ ++ P A Sbjct: 178 KAGISGRIGVINVHPGSLAQPTG--TVMVTIVQIDPIMISFTLPERELANIRATYPQGNA 235 Query: 246 GTTVPVELGLANEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARVRLG 305 PV L ++ + G++ +DN DT SGTIR++A F NA+ +L PG Y V + Sbjct: 236 ----PVHAQLPGQEVLT--GKLTFIDNLADTQSGTIRMKAEFANAEQKLWPGSYINVSMV 289 Query: 306 GGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDGLVVIEKGLQPGERI 365 AVL+ +A+ T + V V ++ ++ V A G + G++ G R+ Sbjct: 290 SREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISVLAIEGGQAAVS-GVKAGSRV 348 Query: 366 VVNGLQRIRPGDAI 379 VV G + +RPG I Sbjct: 349 VVEGTKNLRPGTKI 362 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 116/414 (28%), Positives = 186/414 (44%), Gaps = 55/414 (13%) Query: 9 KRFALTATVLAVIALSVGGAISVVGLS-ANATTAPTAAAAGAPVDVAEVVQRQIIDWQSY 67 ++FAL + V L +G AI V+GL A AT ++AEV ++Q + S Sbjct: 33 RKFAL----IVVGVLLIGAAI-VIGLRFAKAT------------ELAEVSKQQATRYVSV 75 Query: 68 -SGRIEAVDRVEVRPLVGGTLTAV---------------HFKD-GALVKKGDLLFTIDPR 110 S R A D V P GTL + KD G VK+GDLL ID Sbjct: 76 TSPRSSATDNVLRLP---GTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVIDTP 132 Query: 111 PYEAEVARAEAQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAA 170 ++ A+A A A S R L +A++++D +EK+NA AVA + Sbjct: 133 EVAQQLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAADNS 192 Query: 171 ARAALRAARLNLEYTRITAPVSGRISRAEVTVGNVVNPGAGNAPLTTLVSV--AKVYASF 228 ++A ++ + L Y+RI AP G ++R + +G +V+ G L TL +VY Sbjct: 193 SKATVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYV 252 Query: 229 DVDEQSFLKYVNPARAAGTTVPVELGLANE-DGYSRQGRVGSVDNRLDTASGTIRVRAIF 287 QS+ + AG TV + L NE G G++ +DT + T++V Sbjct: 253 ---PQSYSTQIK----AGNTVGITL---NEIPGKVFDGKIARTAGAIDTVTRTLQVAIDL 302 Query: 288 DNADGQLVPGLYARV--RLGGGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVV 345 N DG L+PG YA+V + GGS + + + + + R +V D + + VV+ Sbjct: 303 PNPDGVLLPGAYAQVAIKASGGSASSLTIPNNTLLFRPEGPRVAVVGD-DGKVRLQPVVI 361 Query: 346 GAGHDGLVVIEKGLQPGERIVVNGLQRIRPGDAITPTVVPM-QAQTTAPDVGKA 398 + + G+ +++++N + GDA++ P +A T A + GKA Sbjct: 362 ARELGVDIELASGVTAQDKLIINPADSLSNGDAVSVITPPADKAATPATNKGKA 415 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 819,042 Number of extensions: 31909 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 15 Length of query: 398 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 313 Effective length of database: 906,776 Effective search space: 283820888 Effective search space used: 283820888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)