BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0287.p (504 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 446 e-126 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 258 6e-70 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 221 7e-59 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 206 3e-54 gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 204 9e-54 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 446 bits (1147), Expect = e-126, Method: Compositional matrix adjust. Identities = 253/487 (51%), Positives = 333/487 (68%), Gaps = 16/487 (3%) Query: 12 LRPVRIGSALLAALLVLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAE 71 ++ + + + A LVLAGCS A E +D P A++E + T +A WK A PA+ Sbjct: 1 MKKFNLALSTMVAALVLAGCSTARPPEELKLDLPNAYREQS-TVKANELDGAWKLAAPAD 59 Query: 72 DIHRGQWWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARAL--TRDARSGYFPQVDTG 129 + RG WWK+FGD++L+ L A +N +L A AR+ ARA+ DA G QVD G Sbjct: 60 NKDRGAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGV--QVDAG 117 Query: 130 VGATRQRTSPASQGLPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDAATADAQRSEAL 189 VG TR S +QG A+TQ YRA ++ +YEVDLFGR++ AA DA+ EA Sbjct: 118 VGPTR---SGNAQG----ASTQ----YRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAA 166 Query: 190 FHSVLLALQADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARA 249 + SVLLALQ+DVAQQYF +R LD+ ++ TV LRQE+L L QRRFD GD SE+DVA+A Sbjct: 167 YRSVLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQA 226 Query: 250 RAELASAQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLNRLAVTVPAGLPSTLLE 309 + E A+ +E G+ RQRA +HALAILLG+ PAEF+LP PL VTVP+GLPS LLE Sbjct: 227 KTEWATTSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAAAVVTVPSGLPSDLLE 286 Query: 310 RRPDIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLV 369 RRPDIA A+R +AA++AR+G AK+AFFP L LTG GYES +L DLF WSSR+++LGP+V Sbjct: 287 RRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVV 346 Query: 370 GTALSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQ 429 GT LSMP+FDGGR Q+ + RA A+YE VA YR VL F++VEDNL+ LR LD Q + + Sbjct: 347 GTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFE 406 Query: 430 DEAVAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRAL 489 ++AV ++ A+ L+ T+YR G+ SYF+VIDA R+ L QR+ + G+RA ++V LIRAL Sbjct: 407 EQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRAL 466 Query: 490 GGGWGGP 496 GGGW P Sbjct: 467 GGGWEAP 473 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 258 bits (659), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 277/483 (57%), Gaps = 30/483 (6%) Query: 20 ALLAALLVLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAEDIHRGQWW 79 A L ALL+L GC+V P Y+RP AP QA + W+ + P + +G WW Sbjct: 10 ASLLALLILGGCAVGPDYQRPD----------APVAQAWKTEAGWQASNPRDGELKGAWW 59 Query: 80 KIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRTSP 139 +IF D +LNAL++ A + Q + A AR+ QARA A S +FP++ G+ R RTS Sbjct: 60 EIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTS- 118 Query: 140 ASQGLPADANTQPFTL----YRAQVNVSYEVDLFGRVASTVDAATADAQRSEALFHSVLL 195 A + L + N+Q ++ + A VSYE+DLFGRV + A A AQ+++A F + L Sbjct: 119 AERPL-TNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRL 177 Query: 196 ALQADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELAS 255 L A++A Y +R+ DA ++ + T+ + ++L + R + G S +D+ + + A+ Sbjct: 178 VLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAA 237 Query: 256 AQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLNRLAVTVPAGLPSTLLERRPDIA 315 Q++ + QRA ++A+A L+G +F LP A +P P+ LLERRPDIA Sbjct: 238 TQTQLTLLQDQRARYQNAIATLVGVPAPDFKLPVNLAVTTAPAIPLTAPAALLERRPDIA 297 Query: 316 AAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFN-----WSSRTFLLGPLVG 370 AAERAMAAANA++GVA+SA+FPSL L+G G ++ QL +LF+ WS +G Sbjct: 298 AAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWS---------IG 348 Query: 371 TALSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQD 430 + + IFDGGR A VD A+A Y++ + YR +VL A +EV+D L + L + + Sbjct: 349 VSATQMIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAK 408 Query: 431 EAVAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALG 490 A ++ R+ LS +Y+ G + +V+ A +T L +R V L G+R +TV LI+ALG Sbjct: 409 VAADSADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALG 468 Query: 491 GGW 493 GGW Sbjct: 469 GGW 471 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 169/480 (35%), Positives = 254/480 (52%), Gaps = 26/480 (5%) Query: 17 IGSALLAALLVLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAEDIHRG 76 I ALLAA VL+ CS+AP Y RP D P A P+ A+ +Q + A DI Sbjct: 4 ITLALLAAG-VLSACSMAPKYVRP--DAPVAADYGVPSK---ADNNQVR----AVDIG-- 51 Query: 77 QWWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQR 136 W F D +L L A N+DL+ AA R+ +ARAL + P ++ +R R Sbjct: 52 -WRNFFTDPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRAR 110 Query: 137 TSPASQGLPADANTQPFTLYRAQVNVS-YEVDLFGRVASTVDAATADAQRSEALFHSVLL 195 PAS + ++ + Y+ + ++ +E+D FGRV S DAA A +E + + Sbjct: 111 V-PAS--ISNTGSSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQI 167 Query: 196 ALQADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELAS 255 +L ++VA+ Y R +L R T + R E+ +L ++RF+ G S +D+ A L + Sbjct: 168 SLVSEVAKAYLSERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQT 227 Query: 256 AQSEALGIARQRATAEHALAILLGRTPAEFSLPP-QPLNR--LAVTVPAGLPSTLLERRP 312 A++ L RQRA A +AL +L+G+ + LPP Q L+ + +PAGLPS LL +RP Sbjct: 228 ARAAELLAQRQRAQAMNALTLLVGQPLTD--LPPAQALSSQTILTDIPAGLPSDLLTQRP 285 Query: 313 DIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTA 372 DI +AE+ + +ANA +G A++AFFP ++LT GLG S +L LF SR++ P Sbjct: 286 DIRSAEQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAP----Q 341 Query: 373 LSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDEA 432 L +PIFD GR + ++ A + VA Y ++ AFREV D L +LD+Q AQ Sbjct: 342 LVLPIFDAGRNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLV 401 Query: 433 VAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGG 492 A + +++ G S DV+DA R + Q + V + R + V+L R+LGGG Sbjct: 402 QEAQAERFKFATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGG 461 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 235/475 (49%), Gaps = 28/475 (5%) Query: 27 VLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAEDIHRGQWWKIFGDDK 86 +L GCS+AP YERP + + + Q AN + P W + F D Sbjct: 21 ILVGCSLAPVYERPDLPVSKTWPD-----QRLAN----ERNSPDVTASEIDWKEFFIDQN 71 Query: 87 LNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRTSPASQGLPA 146 L+ + A N+DL+ AA + +ARAL + P V G RQRT PA Sbjct: 72 LSQVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRT-------PA 124 Query: 147 DANTQPFT----LYRAQVNV-SYEVDLFGRVASTVDAATADAQRSEALFHSVLLALQADV 201 D N + F+ Y A + + S+E+D FGR+ + AA ++ S +AL ++V Sbjct: 125 DLNDKGFSDVTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEV 184 Query: 202 AQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELASAQSEAL 261 A +Y + +L T+ R +S Q ++G SE+D+ ++ + L +A+ Sbjct: 185 AMRYQALAADHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALA 244 Query: 262 GIARQRATAEHALAILLGRTPAEFSLPP---QPLNRLAVTVPAGLPSTLLERRPDIAAAE 318 RQRA ++AL +L+G T LP L + +P GLPS L+ RPDI E Sbjct: 245 QQTRQRAVDQNALRLLVGATIDPSLLPSGMSDALPAMLADIPVGLPSDLISTRPDIRQHE 304 Query: 319 RAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPIF 378 + + NA +G A++AFFP ++LTG LG S++L LF SR++ P V S+PIF Sbjct: 305 AILRSENASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQV----SLPIF 360 Query: 379 DGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDEAVAASTR 438 D GR +A ++ A+A + +A Y ++ AFREV D LA L E+ RA A Sbjct: 361 DVGRNRANLNVAKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRASTAQERAERV 420 Query: 439 AAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 493 LS +Y G SY + +DA R++ Q+ ++ + ++ + L +ALGGGW Sbjct: 421 RYVLSKQRYESGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGW 475 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 204 bits (519), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 158/426 (37%), Positives = 232/426 (54%), Gaps = 19/426 (4%) Query: 78 WWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRT 137 WW +F D LN LE N++LK+ A++ ARA + S P + G+ +R + Sbjct: 54 WWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAARAAVAASYSARLPTLSVGLAGSRD-S 112 Query: 138 SPASQGLPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDAATADAQRSEALFHSVLLAL 197 +P+S P N S+EVDL+GR+A A A+ Q S + L+ Sbjct: 113 NPSSTTRSTTVQN-PSNNVSLSGNASWEVDLWGRLAQATTGAQANLQASVDDLAAARLSA 171 Query: 198 QADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELASAQ 257 QA +AQ YF +R DA + +V Q SL L Q R+ G ++ VDV +A+ +L +AQ Sbjct: 172 QATLAQTYFSLRTTDAQLSVLERSVAAYQRSLDLTQFRYGGGVVARVDVLQAQTQLKAAQ 231 Query: 258 SEALGIARQRATAEHALAILLGRTPAEF------SLPPQPLNRLAVTVPAGLPSTLLERR 311 ++ QRA EHA+A+LLG P+ SLP PL VP LP+TLLERR Sbjct: 232 AQLAEAIAQRAILEHAIAVLLGVPPSALALERNASLPQAPL------VPQMLPTTLLERR 285 Query: 312 PDIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGT 371 PDIAAA+R +AAA A++GVA +A+FPSL L+ G GY+++ L +L + + + LG V Sbjct: 286 PDIAAAQRRVAAAYAQIGVAHAAYFPSLVLSAGGGYQNSSLSNLISAPNLFWSLGASVAQ 345 Query: 372 ALSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDE 431 A IFDGG+RQ +A++ ++ + YR TVL A +EVEDNL L ++ + Q E Sbjct: 346 A----IFDGGQRQLASAQAQSVADQATSAYRQTVLTALQEVEDNLILAAQLQQEAQLQQE 401 Query: 432 AVAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGG 491 ++ A+ R ++ QYR G VSY +V A T L + ++ R +T L++ + G Sbjct: 402 SLEAAQRTLEITLDQYRAGTVSYLNVAIAQTTALVSENNLLSTQNRRLAATNILLKNIAG 461 Query: 492 GWGGPD 497 W PD Sbjct: 462 RW-EPD 466 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 995,538 Number of extensions: 37128 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 13 Length of query: 504 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 417 Effective length of database: 899,382 Effective search space: 375042294 Effective search space used: 375042294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)