BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0286.p
         (167 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981333|ref|YP_001353553.1| hypothetical protein mma_1863 [...   155   1e-39

>gi|152981333|ref|YP_001353553.1| hypothetical protein mma_1863
           [Janthinobacterium sp. Marseille]
          Length = 169

 Score =  155 bits (392), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 1/167 (0%)

Query: 1   MSITLYQVSIPMLIHGLNTLSSLLEKAEQHAQAQQIDHQQLLSARLYEDMLPLIGQVQRA 60
           M+I+LY  S+P+    LN++S +L+K E++A A+ I  +  L ARL+ DM PL+ QVQ A
Sbjct: 1   MTISLYAASVPVFKQMLNSVSDVLKKTEEYATAKSIAPEAYLQARLFPDMFPLLRQVQVA 60

Query: 61  SDTAKASASRLSSVAAPAFADEEASFDDLQARINKTIVFLEAIPADAINGQEERAVTLKL 120
            D ++  ++RL+ +  P F D E SF DLQA I KT+ F++ I A+ I+GQE R + L+ 
Sbjct: 61  CDFSRGVSARLAGLEVPKFDDSEKSFADLQALIAKTLAFIDGITAEQIDGQETREIVLRP 120

Query: 121 -RGEECTMTAQQYLTDFGLPNFLFHVTTAYAILRNQGVKLGKMDFLN 166
              +E     Q YL  FGLP F FHVTT YAILR+ G+++GK D++ 
Sbjct: 121 GTPKEKKFNGQAYLLSFGLPQFFFHVTTTYAILRHNGIEIGKRDYMG 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 292,499
Number of extensions: 9087
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 90
Effective length of database: 936,352
Effective search space: 84271680
Effective search space used: 84271680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)