BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0285.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980676|ref|YP_001352799.1| SulP family sulfate permease [J... 178 8e-46 gi|152980813|ref|YP_001354101.1| sulfate transporter [Janthinoba... 107 1e-24 gi|152981082|ref|YP_001351778.1| high affinity sulfate transport... 105 5e-24 >gi|152980676|ref|YP_001352799.1| SulP family sulfate permease [Janthinobacterium sp. Marseille] Length = 568 Score = 178 bits (451), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 145/519 (27%), Positives = 254/519 (48%), Gaps = 44/519 (8%) Query: 37 QNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGMISGAAGSMA 96 Q++ AGLT +P +AFA+ + + P G++ A + + GG I G AG+ Sbjct: 26 QDLTAGLTVGIVALPLAMAFAIASGVKPEAGIFTAVIAGFLVSALGGSRVQIGGPAGAFI 85 Query: 97 VVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRMVPHPVMLGFVNGLAIVIALS 156 V+I +V ++G L V +G+++ A G RLG L+R +P P+++GF +G+A++IALS Sbjct: 86 VIIYGIVEKYGVANLLIATVFAGVMLCAMGVFRLGSLIRYIPVPIVIGFTSGIAVLIALS 145 Query: 157 QL-EHFRLHTDS--GLHWLQGSALL----------IMIGLTLATMLIVWLL--------- 194 Q+ + F LH + G + Q L I+IG+ ++ W L Sbjct: 146 QMKDFFGLHIEKMPGDFFAQIQTLAQNFDSFNPTSIIIGVLSLALIFGWPLLLKPKATEL 205 Query: 195 ---PRVT--------KAIPPALAAILTVGLVTYVSGLHTRTLG-DMAQIAGGLPPLHWPS 242 PRV +A+P + ++ L + L T+G I G+P P Sbjct: 206 ELPPRVATHRMRRLLRALPGTIIVLVLATLAVSLFDLKVDTIGSKFGGIPQGVPDFALPE 265 Query: 243 VPMNLETLHIIGPYAVLMAIVGLLETLLTFNLTDEITASRGQPNRECLALGAANIVSGLF 302 L + P A+ +A++G +E+LL + D IT R PN+E +A G AN+V+ F Sbjct: 266 FSWAL-VQQLFAP-ALTIALLGAIESLLCARVADNITGDRHDPNQELMAQGIANVVTPFF 323 Query: 303 GGMGGCAMIGQTMINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVA 362 GG+ I +T+ N+ +G S +SG++ + +L +L +P IPLAALA ++ VA Sbjct: 324 GGIPATGTIARTVTNIRAGAVSPVSGILHALTLLFIVLIAAPLANNIPLAALAAILLYVA 383 Query: 363 QETFAWGSLRVLGKVPRSDALVIIAVTIITVLTDLAVAVLCGIVIAALNFAWQHAREVRA 422 W L + +++++ +TV+ DL VAV G+V+A + F ++ + R Sbjct: 384 YNMGDWHEFARLRHFSMNYRILMLSTFFLTVIVDLTVAVQVGLVLACVFFIYRISSLTRI 443 Query: 423 EQRDEAD-------GSRTYLPHGTLFFASTTRFLELFDTQNDPQQ-VTLDCRYLRLADHS 474 EQ + G Y G+LFF + + L + + P++ + L+ L D + Sbjct: 444 EQIPNEEMVVELPPGVHAYSIFGSLFFGAVGKLEGLIEPKAMPERALILELHQLINLDAT 503 Query: 475 AIAAVQTLAERYVRAGKVLRVMALSQRCSQLLQRAGLPD 513 + A++T+ + + G L + L+++ L++R+G D Sbjct: 504 GLDALETIRKSLQKHGSQLILCGLNRQPRDLMRRSGFLD 542 >gi|152980813|ref|YP_001354101.1| sulfate transporter [Janthinobacterium sp. Marseille] Length = 582 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 125/524 (23%), Positives = 230/524 (43%), Gaps = 44/524 (8%) Query: 28 PPSRLRELRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGM 87 P + + L ++LAG+T + +PE +A+A +A L P GLY + FG Sbjct: 26 PKYQSKWLGADLLAGVTVAAFCIPESMAYAGLAGLPPQAGLYASLLAVFAYVFFGTSKQA 85 Query: 88 ISGAAGSMAVVI---VALVVQHGAQYF--LATV--VLSGLIMLAFGALRLGKLVRMVPHP 140 G ++A+++ +A VV H + +A + +L GLI + LRLG LV + Sbjct: 86 AIGPTSALAILVATGLAGVVSHDPARYGEMAALLAILVGLIAIVARVLRLGFLVNFISES 145 Query: 141 VMLGFVNGLAIVIALSQL-EHFRLHTDSGLHWLQ--------GSALLIMIGLTLATMLIV 191 V+ GF G AI I +QL + F + +G + G +GL + + + Sbjct: 146 VLTGFSAGAAIYIGTTQLGKLFGIEGANGEFIDRIVYIAAHLGETNFYALGLGVFGIAFL 205 Query: 192 WLLPRVTKAIPPALAAILTVGLVTYVSGLHTRTLGDMAQIAGGLPPLHWPSVPM-NLETL 250 + ++ +P AL + L+ + L+T + QI GLPP+ PS M +++ L Sbjct: 206 LVTEKLAPKVPWALVLVAISILLMIFTALNTTGIKITGQIPTGLPPMKVPSFTMADVQAL 265 Query: 251 HIIGPYAVLMAIVGLLETLLTFNLTDEITASRGQPNRECLALGAANIVSGLFGGMG-GCA 309 L++ V + + TF + N+E LA+GAAN++ GL GC+ Sbjct: 266 LPTAFAVFLLSYVEGMGVVRTFAAKHKYPV---DANQELLAVGAANVLCGLGAAQPVGCS 322 Query: 310 MIGQTMINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWG 369 M ++ +N +G ++ L+G + G+++ + +LF + +P LA V+ + + Sbjct: 323 M-SRSAVNDEAGAKTPLAGAICGILLGVIVLFFTGVFTNLPEPVLAAVVIIAVKGLIDIP 381 Query: 370 SLRVLGKVPRSDALVIIAVTIITVLTDLAVAVLCGIVIAALNFAWQ-------------- 415 +L L +V + + +A + ++ + V+ G V++ L W+ Sbjct: 382 ALMRLYRVSPKEFWIALAAMLGVLVFGMLEGVMIGTVLSLLMLVWRASNPSTVLLGRIPG 441 Query: 416 ---HAREVRAEQRDEADGSRTYLPHGTLFFASTTR----FLELFDTQNDPQQ-VTLDCRY 467 ++ R + + G + + LF+A+ + LE + Q P + V D Sbjct: 442 SELYSDLARHPENETVPGIMVFRANSGLFYANIAKIKDDLLEAIERQAAPVKLVIFDLSS 501 Query: 468 LRLADHSAIAAVQTLAERYVRAGKVLRVMALSQRCSQLLQRAGL 511 +D +A + L E G L++ L+ LL+R GL Sbjct: 502 SPYSDIAAAEMLLDLQEELQERGITLKLSNLTGEVRDLLRRDGL 545 >gi|152981082|ref|YP_001351778.1| high affinity sulfate transporter [Janthinobacterium sp. Marseille] Length = 559 Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/422 (22%), Positives = 186/422 (44%), Gaps = 19/422 (4%) Query: 28 PPSRLRELRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICTITALFGGRPGM 87 P + L+ + AG++ L+P+ +A+A +A + GLY A I L+G + Sbjct: 15 PRPTVASLKSDAWAGISVGLVLIPQAVAYATLAGMPAATGLYAALLPSVIGILWGSSALL 74 Query: 88 ISGAAGSMAVVIVALVVQHGAQYFLATVVL-------SGLIMLAFGALRLGKLVRMVPHP 140 G A ++++ + A + V L +G+I GA RLG+L +V P Sbjct: 75 AVGPAALTSLLVFGSLSPMAAPASMQWVTLAIWLSIYTGVIQFMLGAFRLGRLSNLVSQP 134 Query: 141 VMLGFVNGLAIVIALSQLEHF-----RLHTDSG---LHWLQGSALLIMI-GLTLATMLIV 191 V++GF+N AI+I +SQL D G + ++++M T++++ Sbjct: 135 VIIGFINAAAIIIMMSQLPALIGVPDLFVADIGKVVTRVMDAPSIMLMTSAFGFGTLILL 194 Query: 192 WLLPRVTKAIPPALAAILTVGLVTYVSGLHTRTLGDMAQIAGGLPPLHWPSVPMNLETLH 251 R P L + +++ G + I GLPPL P+ + E Sbjct: 195 MASKRFFPRFPGILLVTILGTFLSWAVGYAATGAAIVGDIDKGLPPLALPAA-IPFEHHR 253 Query: 252 IIGPYAVLMAIVGLLETLLTFNLTDEITASRGQPNRECLALGAANIVSGLFGGMGGCAMI 311 + A+++A++ E + + + R N+E + G A + SG G Sbjct: 254 DLWSAALVLALISFTEAMSSCRVLARKRRERWDENQELIGQGLAKMASGFSGAFPVSGSF 313 Query: 312 GQTMINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSL 371 ++ +NL +G S S + + + +L ++FL+ + +P + LA ++ V F + + Sbjct: 314 SRSALNLYAGATSAWSTLFSALCVLFSLIFLADLLYYLPRSVLAALIIVPVFGLFDFSAF 373 Query: 372 RVLGKVPRSDALVIIAVTIITVLT--DLAVAVLCGIVIAALNFAWQHAREVRAEQRDEAD 429 + L + R DA + I ++T++ L V+ GI + +++ ++H + E + D Sbjct: 374 KRLFVISRDDAAIAIVTFVVTIIAMPRLHWGVVAGITLTMVSYLYRHMQPRIIEVSEHGD 433 Query: 430 GS 431 G+ Sbjct: 434 GT 435 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,064,558 Number of extensions: 42424 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 3 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)