BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0283.p
         (555 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [...    65   1e-11
gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [...    64   3e-11

>gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 6/94 (6%)

Query: 414 LNDEERAIINNHIVITIKMLESLPWPKQLARVTEFA-GGHHERMDGKGYPKGLTREQMSV 472
           L++EE  +I  H  I  +ML + P    LA + E A   HHE  DGKGYP G+    + V
Sbjct: 93  LSEEEYDVIRTHPEIGWRMLANHP----LAHIAEHAIRFHHETPDGKGYPTGIRGTDIPV 148

Query: 473 QARIMAVADIFEAVTAVDRPYKRGNTLNEAVEIL 506
           +ARI+ + D F+A+T+  RPY++G  + +A+ I+
Sbjct: 149 EARIVGICDAFDAMTST-RPYRKGMPIEKALSII 181


>gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610
           [Janthinobacterium sp. Marseille]
          Length = 194

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 20/141 (14%)

Query: 399 LDDEEASNLRIRAGTLNDEERAIINNHIVITIKMLES---------------LPWPKQL- 442
           L + E+S L I AG ++D  +  IN H++     L S               L  P +L 
Sbjct: 48  LSETESSLLGIGAG-IHDIGKLCINEHVLNKPSRLTSAEFFFIKQHPMAGYQLLAPLELD 106

Query: 443 ARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAVDRPYKRGNTLNEA 502
            RVT+    HHE  DG GYP GL  E + + ARI+ + D ++A+T ++RPY +G + +EA
Sbjct: 107 TRVTDCVLHHHENFDGSGYPHGLAGENIPLFARIVRIWDSYDAIT-MNRPYHKGRSPSEA 165

Query: 503 VEILAGFKARDHIDPDLFDLF 523
           + +L   KA    DP L   F
Sbjct: 166 LALLEKDKAL--YDPALLASF 184


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,231,919
Number of extensions: 50141
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 555
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 467
Effective length of database: 895,685
Effective search space: 418284895
Effective search space used: 418284895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)