BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0280.p
         (257 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982408|ref|YP_001351701.1| hypothetical protein mma_0011 [...   140   9e-35

>gi|152982408|ref|YP_001351701.1| hypothetical protein mma_0011
           [Janthinobacterium sp. Marseille]
          Length = 297

 Score =  140 bits (352), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 127/250 (50%), Gaps = 53/250 (21%)

Query: 24  LVLWLLFAATLAHAQSQPVGQVTHLSGVLSVRHADGTRMVLAVKSAILQGDTLITERETY 83
           L+L  L  AT+  A    VG VTHLSG L  + A+G+  VL +KSA+  GDTL T+ ++Y
Sbjct: 14  LLLAALCTATVVQAAG--VGTVTHLSGPLLAKKANGSVRVLGMKSAVEPGDTLSTQNKSY 71

Query: 84  ARVKFLDNAEIVLRPGTEVAVNKYIYDEKEPKNDSVAIGLVKGGLRAVTGLVGKRNHEAV 143
           A++KF D + ++L+P T + ++K+ YD  +P  D++A  LV+GG+RA  GL+GKR+ ++V
Sbjct: 72  AQIKFSDGSALILQPDTVLTIDKFSYDAAKPSADNIAYTLVQGGVRANAGLLGKRSKDSV 131

Query: 144 SFDTPTATIGIRGTHFGALYCQNDCA---------------------------------- 169
              TP A I ++       Y + D                                    
Sbjct: 132 QMVTPMANISMQAASVVVQYVKPDEEAVAAAREAYLLASTAVLDVAMQATRSDMPAPAAI 191

Query: 170 --------GVPTPSG---------QPLANGLHVDVVTGAIQVTNPSGSQLYSAGQFGFVP 212
                    +P P+G          PL  GL+V V+ G I VTN  G+Q ++ GQFGF P
Sbjct: 192 QPLMLAQINIPLPTGLTPKATGSTPPLPPGLYVQVIDGLINVTNKGGAQTFAPGQFGFTP 251

Query: 213 SIGQPPVIVP 222
           +  Q PVIVP
Sbjct: 252 TPIQAPVIVP 261


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 579,879
Number of extensions: 24372
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 176
Effective length of database: 921,564
Effective search space: 162195264
Effective search space used: 162195264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)