BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0278.p (582 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981372|ref|YP_001353395.1| hemolysin activation/secretion ... 327 1e-90 gi|152981377|ref|YP_001351699.1| hemolysin activation/secretion ... 327 1e-90 gi|152980816|ref|YP_001354070.1| hemolysin activation/secretion ... 164 2e-41 gi|152981103|ref|YP_001352452.1| hemolysin activation/secretion ... 90 3e-19 gi|152981189|ref|YP_001353307.1| hemolysin activation/secretion ... 68 2e-12 >gi|152981372|ref|YP_001353395.1| hemolysin activation/secretion protein [Janthinobacterium sp. Marseille] Length = 526 Score = 327 bits (839), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 194/521 (37%), Positives = 295/521 (56%), Gaps = 28/521 (5%) Query: 65 RFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRVYGDIQQALEAVENAYRSAGYTAVQVSV 124 FDI RF + GNTLL +D +VAP+ G R + D+ +ALEA+E AY + GY V++ + Sbjct: 31 HFDINRFDVRGNTLLPPQTVDRLVAPYLGKDRDFADVMKALEALEAAYHARGYQLVRIDL 90 Query: 125 PEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLREGSSPNLRSISEAVQLA 184 PEQEL+QG V L V++ +G VV+ N +F NIR S+P L+EG +P+L+++S++++LA Sbjct: 91 PEQELNQGTVVLNVVQAKIGNVVIEGNSHFDDANIRRSLPALQEGQTPDLKAVSKSLKLA 150 Query: 185 NDNPAKQVNVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGSADTGHWRTGVAVQHSN 244 N+NPAK+V + + ++E ++++A + V D+ R +N DN+G A TG R GV +Q++N Sbjct: 151 NENPAKKVTMRMKSAEQDDEVEATLAVVDESVWRTTINFDNTGVASTGRTRAGVVLQNAN 210 Query: 245 LFNRDHVATVAYTTSPDSPSGAKVDLYSLGYRLPMYGLGDSLDFIYGKSNVSSGQTLALN 304 +F DHV ++ YTT+ + PS +V +Y +GY +P+Y LGDS+DF S+V +G A Sbjct: 211 MFGLDHVMSLQYTTTLEEPS--RVGVYGVGYHIPLYALGDSMDFYASYSDVDAGTVTAGI 268 Query: 305 STLNITGRGEIYALRWNHFFARSGEWSSKLVFGADYKKVDSSCNISGGLLNGASLNTCLP 364 + ++G+G +Y R+N A G ++SKL++G D K+ +S + G L GA + Sbjct: 269 FDIAVSGKGSMYGARYNQNLATVGNYASKLMYGIDLKQYKNSMQLLGVEL-GADI----- 322 Query: 365 YSTLPLSVSYSAQRQGVGQVLDYNLGMARNMATGQARSNDTLQVTDRYSLFTGSRKSMDN 424 + P+SV Y + + + N++ G SN + DR + N Sbjct: 323 -TVRPVSVGYQGDWSWGDGAIGFATTLLHNISGG---SNGSQSDFDRVRF-----DAKAN 373 Query: 425 FIAIRGGASWLKAFESDWQVRLASLLQVSPHALPAVEQFGLAGANAVRGFTERAVAADSG 484 + AIR G S +A W R Q + AL EQFG GA +VRGF ER VA DSG Sbjct: 374 YTAIRVGGSLTQALPEQWLARAIINGQYTKDALIPGEQFGAGGAASVRGFLEREVANDSG 433 Query: 485 VILNSEIYTPDLLVKSELRGNLRLLAFVDLGRGANNNVTAASTLP---STVTLASFGAGL 541 + N E+YT L + + R LAF D + +T LP ST+++ S G GL Sbjct: 434 ITGNFEVYTAPLCGSGKWQ--CRALAFYD-----HAYLTRNHALPGEFSTISINSVGLGL 486 Query: 542 RYILGRDVSLRLDVARVLLNGNSATEQRGDLNAHLSAILGF 582 R LG DV+ ++DV V L+ + T + GD H L F Sbjct: 487 RLQLGNDVNFQVDVGHV-LHAEATTTRNGDNRVHARLALSF 526 >gi|152981377|ref|YP_001351699.1| hemolysin activation/secretion protein [Janthinobacterium sp. Marseille] Length = 526 Score = 327 bits (838), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 193/521 (37%), Positives = 295/521 (56%), Gaps = 28/521 (5%) Query: 65 RFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRVYGDIQQALEAVENAYRSAGYTAVQVSV 124 FDI RF + GNTLL +D +VAP+ G R + D+ +ALEA+E AY + GY V++ + Sbjct: 31 HFDINRFDVRGNTLLPSQTVDSLVAPYLGKDRDFADVMKALEALEAAYHARGYQLVRIDL 90 Query: 125 PEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLREGSSPNLRSISEAVQLA 184 PEQEL+QG V L V++ +G VV+ N +F NIR S+P L+EG +P+L+++S++++LA Sbjct: 91 PEQELNQGTVVLNVVQAKIGNVVIEGNSHFDDANIRRSLPALQEGQTPDLKAVSKSLKLA 150 Query: 185 NDNPAKQVNVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGSADTGHWRTGVAVQHSN 244 N+NPAK+V + + ++E ++++A + V D+ R +N DN+G A TG R GV +Q++N Sbjct: 151 NENPAKKVTMRMKSAEQDDEVEATLAVVDESVWRTTINFDNTGVASTGRTRAGVVLQNAN 210 Query: 245 LFNRDHVATVAYTTSPDSPSGAKVDLYSLGYRLPMYGLGDSLDFIYGKSNVSSGQTLALN 304 +F DHV ++ YTT+ + PS +V +Y +GY +P+Y LGDS+DF S+V +G A Sbjct: 211 MFGLDHVMSLQYTTTLEEPS--RVGVYGVGYHIPLYALGDSMDFYASYSDVDAGTVTAGI 268 Query: 305 STLNITGRGEIYALRWNHFFARSGEWSSKLVFGADYKKVDSSCNISGGLLNGASLNTCLP 364 + ++G+G +Y R+N A G ++SKL++G D K+ +S + G L GA + Sbjct: 269 FDIAVSGKGSMYGARYNQNLATVGNYASKLMYGIDLKQYKNSMQLLGVEL-GADI----- 322 Query: 365 YSTLPLSVSYSAQRQGVGQVLDYNLGMARNMATGQARSNDTLQVTDRYSLFTGSRKSMDN 424 + P+S+ Y + + + N++ G SN + DR + N Sbjct: 323 -TVRPVSIGYQGDWSWGDGAIGFATTLLHNISGG---SNGSQSDFDRVRF-----DAKAN 373 Query: 425 FIAIRGGASWLKAFESDWQVRLASLLQVSPHALPAVEQFGLAGANAVRGFTERAVAADSG 484 + AIR G S +A W R Q + AL EQFG GA +VRGF ER VA DSG Sbjct: 374 YTAIRVGGSLTQALPEQWLARAIINGQYTKDALIPGEQFGAGGAASVRGFLEREVANDSG 433 Query: 485 VILNSEIYTPDLLVKSELRGNLRLLAFVDLGRGANNNVTAASTLP---STVTLASFGAGL 541 + N E+YT L + + R LAF D + +T LP ST+++ S G GL Sbjct: 434 ITGNFEVYTAPLCGSGKWQ--CRALAFYD-----HAYLTRNHALPGEFSTISINSVGLGL 486 Query: 542 RYILGRDVSLRLDVARVLLNGNSATEQRGDLNAHLSAILGF 582 R LG DV+ ++DV V L+ + T + GD H L F Sbjct: 487 RLQLGNDVNFQVDVGHV-LHAEATTTRSGDNRVHARLALSF 526 >gi|152980816|ref|YP_001354070.1| hemolysin activation/secretion protein [Janthinobacterium sp. Marseille] Length = 546 Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 135/516 (26%), Positives = 229/516 (44%), Gaps = 25/516 (4%) Query: 65 RFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRVYGDIQQALEAVENAYRSAGYTAVQVSV 124 + DI + + GN++L ++ V P+ G R D++ A +A+ +AY + GY +V V + Sbjct: 52 KVDINEYIVRGNSVLDARTIELAVTPYLGPQRTMKDVENARDALLSAYNARGYQSVYVDL 111 Query: 125 PEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLREGSSPNLRSISEAVQLA 184 PEQ+++ GVV LQV ET VG+V V +Y S +R +P L+EG P+ + Sbjct: 112 PEQQVTGGVVYLQVNETKVGRVRVVGAQYNSPLEVREQVPALQEGKVPDFNLAQAQLTTL 171 Query: 185 NDNPAKQVNVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGSADTGHWRTGVAVQHSN 244 N + +QV + +D + V D P R L+N SADT R ++ H N Sbjct: 172 NRSAKRQVMPLVKQGALPGTMDVDLKVDDSSPWRASAGLNNDYSADTKKLRATASIGHDN 231 Query: 245 LFNRDHVATVAYTTSPDSPSGAKVDLYSLGYRLPMYGLGDSLDFIYGKSNVSSGQTLALN 304 L+ H A++++ +P+ + KV +S Y P+ +LD S S T++ Sbjct: 232 LWQLGHSASMSFFGTPEDLNQTKV--WSGSYTAPLRDSNWTLD----ASGYKSDSTVSTV 285 Query: 305 STLNITGRGEIYALRWNHFFARSGEWSSKLVFGADYKKVDSSCNISGGLLNGASLNTCLP 364 + G+G + + +G W + G D+K + + + G +P Sbjct: 286 GGTTVLGKGYAVGFKATYTVPNTGNWWHTMSVGVDFKNNEEALQLGG-------TGDKVP 338 Query: 365 YSTLPLSVSYSAQRQGVGQVLDYNLGMARNMATGQARSNDTLQVTDRYSLFTGSRKSMDN 424 P+++ Y Q + Y+LG+ T + + Y + ++ N Sbjct: 339 LKYAPITLGYMGFVQ--NERSQYSLGLTMIAGTRSLFGYGSDEQAFAYKRY----EAKPN 392 Query: 425 FIAIRGGASWLKAFESDWQV--RLASLLQVSPHALPAVEQFGLAGANAVRGFTERAVAAD 482 F+ ++ + +FE++ Q+ RLA L SP L + EQ G N+VRG+ D Sbjct: 393 FMVLKADLNGSYSFENEAQIGFRLAGQLTDSP--LVSGEQIAAGGMNSVRGYLSAETTGD 450 Query: 483 SGVILNSEIYTPDLLVKSELRGNLRLLAFVDLGRGANNNVTAASTLPSTVTLASFGAGLR 542 GV+ + E+ + L + N R+ AF D R + TLAS G G Sbjct: 451 YGVVGSLELRSKPLTYLNPWVENWRVYAFGDASRLKLRDPLVEQQ--DLFTLASVGFGTS 508 Query: 543 YILGRDVSLRLDVARVLLNGNSATEQRGDLNAHLSA 578 + LG +S R+DV L G + +N ++A Sbjct: 509 FRLGEQISGRVDVGYPLKAGPRTEKHDTRVNFSVNA 544 >gi|152981103|ref|YP_001352452.1| hemolysin activation/secretion signal peptide protein [Janthinobacterium sp. Marseille] Length = 565 Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 131/537 (24%), Positives = 206/537 (38%), Gaps = 63/537 (11%) Query: 65 RFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRVYGDIQQALEAVENAYRSAGYTAVQVSV 124 RF ++ F I GN + L +V TG R G+++QA + YR GY + + Sbjct: 71 RFQVQAFRISGNQSIDSALLLPLVQDVTGAERSLGELEQAASRITAYYREHGYLVARAYI 130 Query: 125 PEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLREGSSPNLRSISEAVQLA 184 P Q++ GVV + VLE KV + + FS ++ + + G + N + A+ L Sbjct: 131 PAQDIQGGVVEITVLEGHYDKVRLDNQSGFSDAILQRYLTPQQLGETVNDAELERAILLI 190 Query: 185 ND-NPAKQVNVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGSADTGHWRTGVAVQHS 243 D A Q L D + V + L DN G +TG R G AVQ + Sbjct: 191 QDVTQAAQAGGNLQPGALPGTTDLTLKVGPAPGWQARLEADNYGVRNTGRNRFGGAVQWN 250 Query: 244 N-LFNRDHVATVAYTTSPDSPSGAKVDLYSLGYRLPMYGLGDSLDFIYGKSNVSSGQTLA 302 N N D + +TT+ D LGY + + G G L Y +S G A Sbjct: 251 NPTGNADRLDARVFTTADGQ------DYARLGYSIAVGGDGLRLGLAYVESRYQVGGDFA 304 Query: 303 LNSTLNITGRGEIYALRWNHFFARSGEWSSKLVFGADYKKVD-----------SSCNISG 351 L+ GR +++ ++ RS +++ L G D K + S ++G Sbjct: 305 ---ALDAYGRAGVWSATASYPLRRSRDFNLNLEAGLDQKSLQDNVGAFASSTRKSNQVAG 361 Query: 352 GLLNGASLNTCLPYS-TLPLSVSYSAQRQGVGQVLDYNLGMARNMATGQARSNDTLQVTD 410 L+G N T S+ + R LD +AR + AR+N Q Sbjct: 362 LGLSGDVRNRIASSEGTTTFSLRAESGR------LDIETPLAREIDALSARTNGAYQ--- 412 Query: 411 RYSLFTGSRKSMDN----FIAIRGGASWLKAFESDWQVRLASLLQVSPHALPAVEQFGLA 466 RY+ + + N +++ G Q + L + E+ L Sbjct: 413 RYTYALAQYQWLGNSTMLLLSVNG--------------------QQASKNLDSAEKMSLG 452 Query: 467 GANAVRGFTERAVAADSGVILNSEI-YTPDLLVKSELRGNLRLLAFVDLGRGANNNVTAA 525 G AVR + + D G + +EI +T D + L G L L FVD G N Sbjct: 453 GPFAVRAYPSGEASGDKGYVATAEIRHTLD---QQLLPGQLMLSGFVDSGM-VETNAKPF 508 Query: 526 STLPSTVTLASFGAGLRYILGRDVSLRLDVARVLLNGNSATEQRGDLNAHLSAILGF 582 + L+ G GL + + + LRL A + G + D + + +L F Sbjct: 509 IQGDNQRRLSGAGVGLSFAMQNRLELRLMYAHKI--GAATARSDTDRSGRIWGMLAF 563 >gi|152981189|ref|YP_001353307.1| hemolysin activation/secretion signal peptide protein [Janthinobacterium sp. Marseille] Length = 563 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 7/241 (2%) Query: 41 IAQPVAAPVAAVMQQA-TAPLPEDERFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRVYG 99 + P A P V ++ A + F ++ I GNT +Q L +V+ G R Sbjct: 47 LVAPKAGPTLEVEERTLNATADQGSSFALKTITITGNTTFTQAELHALVSDLEGGTRTLK 106 Query: 100 DIQQALEAVENAYRSAGYTAVQVSVPEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENI 159 D+ A E + YR GY + +P QE+ GVV + V+E + +++ + S E Sbjct: 107 DLNAAAERITVYYREQGYPVARAYLPAQEIKDGVVTIAVVEGRIAARQLNNKSHLSDERA 166 Query: 160 RASIPGLREGSSPNLRSISEAVQLANDNPA-KQVNVTLTASETTNQIDAAINVKDDKPLR 218 A + +G SI + L ND P TL + D + ++ Sbjct: 167 AAYLDRSGKGGVIRSDSIDRGLLLLNDTPGVTNARATLQPGASVGTSDLVVQLEPGAAYS 226 Query: 219 VMLNLDNSGSADTGHWRTGVAVQHSNLFNRDHVATVAYTTSPDSPSGAKVDLYSLGYRLP 278 ++ DN G+ G +R G + ++ V T T SG+ ++ + Y+LP Sbjct: 227 GNIDFDNYGNRYVGAYRLGGTLNINSPLQIGDVLTANVLT-----SGSGLNYGRVAYQLP 281 Query: 279 M 279 + Sbjct: 282 V 282 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,252,242 Number of extensions: 51752 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 5 Length of query: 582 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 494 Effective length of database: 895,685 Effective search space: 442468390 Effective search space used: 442468390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)