BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0277.p
         (757 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981455|ref|YP_001351905.1| two-component sensor histidine ...    99   1e-21
gi|152981457|ref|YP_001354520.1| two-component sensor histidine ...    87   4e-18

>gi|152981455|ref|YP_001351905.1| two-component sensor histidine
           kinase [Janthinobacterium sp. Marseille]
          Length = 788

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 147/343 (42%), Gaps = 93/343 (27%)

Query: 41  RLDLFFYDLRMRVTKPYLDPRIVIIDIDEKSIAELGRWPWSRDVVAQLVKQMTQTYQAQS 100
           RLD   YDL + V    +   I+I+ ID+ S+AELGRWPWSR + A L+ ++ +  + ++
Sbjct: 40  RLDQSLYDLFLSVDSKPVREDIIIVAIDDYSLAELGRWPWSRKLHADLINKLNKA-KPRA 98

Query: 101 VGFDVVFAEPDNTSGYGRLEDLARGPLKDVPQLAQQLRLLKPQMDYDARLAAALQGQPVV 160
           +G DV+ +E                  +  PQ   QL             AA +Q Q VV
Sbjct: 99  IGLDVILSE------------------ESTPQADGQLA------------AAIMQSQHVV 128

Query: 161 MGYAFSSEPGAVTKGQLPPPAFSLADLGGRDLDVIGWRAYGANLPQLQAAARAGGFFNQV 220
           +    S+       GQ                   G RA G  +P L  +A   G  N  
Sbjct: 129 LPVVLSN------AGQ-------------------GLRA-GLPIPLLANSAHTLGHINLE 162

Query: 221 PGDDGLVRAVPLIARYG----NQFYESLALATARVAVDGKRIKPVFLTTADGLMESQKYD 276
              DG+VR+V L  R G    N  + S AL +    +     K +   T+  L+++ +  
Sbjct: 163 HDSDGVVRSVFL--REGQSGKNWLHFSAALLSTGSGMQYNGTKALPAPTSASLIDTWQ-- 218

Query: 277 YGALAGIAVQARPQPLFIPVERGLTTLVTYRGPGGPNGGAFRYVPAVDVIRGTYPHEQLD 336
                      R   L+IP E G+              G F+ VP V V+RG  P E   
Sbjct: 219 -----------RGDQLYIPYEGGI--------------GHFKSVPYVSVLRGEVPDEFFT 253

Query: 337 GRIMLVGTTVPGLNDLRATPV---NAIYPGVEIHANLIASILD 376
            + +LVG T  G+ D   TPV   +   PG+EI+A+++AS++D
Sbjct: 254 DKYVLVGATALGMADSYPTPVSGNSGAMPGIEINAHVLASLID 296


>gi|152981457|ref|YP_001354520.1| two-component sensor histidine
           kenase [Janthinobacterium sp. Marseille]
          Length = 763

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 135/345 (39%), Gaps = 94/345 (27%)

Query: 43  DLFFYDLRMRVTKPYLDPRIVIIDIDEKSIAELGRWPWSRDVVAQLVKQMTQTYQAQSVG 102
           D F YD  ++ T+      +VII IDE SIA LGRWPW R   AQL+  +T   +A++VG
Sbjct: 18  DRFIYDNLVKATQRQAPSDVVIIAIDEFSIASLGRWPWQRRTHAQLLDILTAA-KAKAVG 76

Query: 103 FDVVFAEPDNTSGYGRLEDLARGPLKDVPQLAQQLRLLKPQMDYDARLAAAL-QGQPVVM 161
            D++FAEP   S                              D DA LA AL   +  V+
Sbjct: 77  MDIIFAEPQYVS------------------------------DDDALLATALANNKRTVL 106

Query: 162 GYAFSSEPGAVTKGQLPPPAFSLADLGGRDLDVIGWRAYGANLPQLQAAARAGGFFNQVP 221
                  PG + +  LP PAF                         + AA   G  +   
Sbjct: 107 PVLIERTPGGL-QPTLPLPAF-------------------------REAANGLGHIHFTF 140

Query: 222 GDDGLVRAVPLIARYGNQFYESLALATARVAVDGKRIKPVFLTTADGLMESQKYDYGALA 281
             DG+VR + L        +   ALA    A   +         A  +  + K+      
Sbjct: 141 EADGVVRGIYLQENLHGVSWPQFALAVFNAAKSNE---------AQSINVNSKFANDG-- 189

Query: 282 GIAVQARPQPLFIPVERGLTTLVT----YRGP--GGPNGGAFRYVPAVDVIRGTYPHEQL 335
                         V  GLT ++      R P  GGP  G F+ +  +DV+ G  P    
Sbjct: 190 --------------VNTGLTDILQGDHLARIPYTGGP--GHFKTISYIDVLSGKIPASFF 233

Query: 336 DGRIMLVGTTVPGLNDLRATPVNAIY---PGVEIHANLIASILDD 377
             + +LVG T  G+    ATPV   +    GVEI+AN+++ +L+D
Sbjct: 234 TDKYVLVGATASGIASTFATPVTTDHEAMSGVEINANILSGLLED 278


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,658,889
Number of extensions: 70591
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 3
Length of query: 757
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 667
Effective length of database: 888,291
Effective search space: 592490097
Effective search space used: 592490097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)