BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0269.p
         (217 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981742|ref|YP_001354271.1| biopolymer transport protein Ex...    59   2e-10

>gi|152981742|ref|YP_001354271.1| biopolymer transport protein ExbB
           [Janthinobacterium sp. Marseille]
          Length = 203

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 4/93 (4%)

Query: 91  SESVYIAKRGE---VQQRLWILDTIVTAAPLLGLLGTILGIIDTFKALAVQGV-SDPGQV 146
            ES+  A RG    +++ L  L TI T APL+GL GT++G+I+ F +    G  ++P Q+
Sbjct: 89  KESIEEAGRGTAHTLERFLTTLGTIATLAPLMGLFGTVVGMIEIFGSQNATGTGANPAQL 148

Query: 147 SQGIGTALYATALGIGIAVVGMFFFNLFQERIE 179
           + GI  ALY T  G+ IA+  + F+  F+  ++
Sbjct: 149 AHGISIALYNTGFGLAIAMPSLVFYRHFRALVD 181


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 455,435
Number of extensions: 16657
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 137
Effective length of database: 925,261
Effective search space: 126760757
Effective search space used: 126760757
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)