BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0263.p (367 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 133 1e-32 gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 131 7e-32 gi|152983216|ref|YP_001352653.1| diguanylate cyclase [Janthinoba... 117 1e-27 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 110 2e-25 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 107 2e-24 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 8/167 (4%) Query: 205 QKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPA 264 ++LE + D LTG+ NRR FDS L EW + + RPL+++++D+DYFKQYND YGH Sbjct: 141 KELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLDIDYFKQYNDHYGHIQ 200 Query: 265 GDALLVQLARVL-RSPLRASDFLARYGGDEFSLILPDTDEIGAHQVSERIKQSVARVKWP 323 GD L Q+A+ L + +R DF R+GG+EF LILP+T+E A V+ER + + + + P Sbjct: 201 GDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAERCRMLIFKEQIP 260 Query: 324 HTD------IEISLGAATVTPSEMCDFSALLHAADQAMY-QRKHGRT 363 H + ISLG TV PS + + AD+ +Y ++ GR Sbjct: 261 HEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRN 307 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 131 bits (329), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 9/185 (4%) Query: 183 QRDAFQKLGRQLEAQIDSHRAMQKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARP 242 QRDA + R+ + Q+ ++ +L++ T TD LTGI NRR FD L EW R R + Sbjct: 148 QRDAAYRALRESQQQL--QKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQE 205 Query: 243 LTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLR-SPLRASDFLARYGGDEFSLILPDT 301 L++L++DVD FK YNDTYGH AGD +L Q+A+ L S +R +D AR+GG+EF++ILP T Sbjct: 206 LSILLIDVDNFKLYNDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPAT 265 Query: 302 DEIGAHQVSERIKQSVARVKWPHTD------IEISLGAATVTPSEMCDFSALLHAADQAM 355 GA +++ +V ++ PH + +S+GAAT+TP + L+ AD+ + Sbjct: 266 GSNGAVISGKKVCAAVEALRIPHAHAAIGEWLTVSVGAATITPQAEQVPNDLIELADKRL 325 Query: 356 YQRKH 360 Y+ K Sbjct: 326 YRAKE 330 >gi|152983216|ref|YP_001352653.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 320 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 112 DFSLCEMAARTPGQVTEVNDLHNDARFANSALARGNPAVRFYAAVPLVSGNGDVMGTLCV 171 D S C A + ++ + D +D RFA++ +P +RFYA PLV NG +GTLC+ Sbjct: 73 DLSFCSHAIHSD-EIMIIPDTLDDGRFADNPFVVEDPRIRFYAGCPLVVMNGCRLGTLCL 131 Query: 172 MDRVARTLTPAQRDAFQKLGRQLEAQIDSHRAMQKLEQQTMTDALTGIGNRRSFDSRLRE 231 +D+V R +T + L +E ++ + + DALTG+ NRR F++ L E Sbjct: 132 VDKVPRKMTQEDIILLKDLAATVEHELTAM-------HMAIVDALTGLVNRRGFEA-LAE 183 Query: 232 EWTRHLRNAR-PLTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYG 290 +N + ++L D++ FK NDT+GH GD L A L+ R++D +AR G Sbjct: 184 SRLNVCKNIQGQASLLFFDLNGFKAINDTFGHAEGDLALRNFANALKLAFRSTDIVARLG 243 Query: 291 GDEFSLILPDTDEIGAHQVSERIKQSVA----RVKWPHTDIEISLGAATVTPSEMCDFSA 346 GDEF+++L D+ ER++ V R K + ++ S+G E + + Sbjct: 244 GDEFAVLLLDSSPSDTGVAVERLRGIVTAQNDREKRGY-ELRFSVGHVDYDGLEDVNVNR 302 Query: 347 LLHAADQAMYQRK 359 +L D MY K Sbjct: 303 MLLDGDTKMYFDK 315 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 12/237 (5%) Query: 137 RFANSALARGNPAVRFYAAVPLVSGNGDVMGTLCVMDRVARTLTPAQRDAFQKLGRQLEA 196 R A+ A GN + ++ D+ ++D V R AQ +A + L A Sbjct: 283 RLADIANTTGNYHQQIDRYSKEITQTADINKLSKILDEVKRETRIAQTEALRSRDIVLAA 342 Query: 197 QIDSHRA----------MQKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTML 246 + D A ++++ + D LTG NRR D L E R R A PL + Sbjct: 343 RKDVEDAEARIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIA 402 Query: 247 MVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYGGDEFSLILPDTDEIGA 306 M+D+D FK+ ND YGH AGD L+ L RV++ LR D +AR+GG+EF ++LPDT A Sbjct: 403 MLDLDDFKKINDKYGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEA 462 Query: 307 HQVSERIKQSVARVKW--PHTDIEISLGAATVTPSEMCDFSALLHAADQAMYQRKHG 361 R+++ + + + HT + ++ A E D +A++ AD A+Y+ K Sbjct: 463 ILTITRLQRELTKQIFMHNHTRLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKA 519 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 10/169 (5%) Query: 205 QKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPA 264 ++L+ +TD LTG+ NRR + RL EE R R+ L+ + +D+D+FK+ ND +GH Sbjct: 178 ERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQG 237 Query: 265 GDALLVQLARVLRSPLRASDFLARYGGDEFSLILPDTDEIGAHQVSERIKQSVARVKWPH 324 GD +L ++A +++ LR SD L R+GG+EF ++L D A V+ERI+ SV+ Sbjct: 238 GDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIVL 297 Query: 325 TDIE-----ISLGAATVTPSEMCDFSA----LLHAADQAMYQ-RKHGRT 363 + E +S+G A++ ++ D +A LL AD A+YQ +K GR Sbjct: 298 SSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRN 346 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.132 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 882,205 Number of extensions: 35794 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 29 Length of query: 367 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 282 Effective length of database: 906,776 Effective search space: 255710832 Effective search space used: 255710832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)