BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0259.p (381 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 223 2e-59 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 196 2e-51 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 167 9e-43 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 142 4e-35 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 139 2e-34 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 223 bits (567), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 200/375 (53%), Gaps = 33/375 (8%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA + +R + +GD V+ N+ L I EF LGPSGCGK+TLLR IAG + +G Sbjct: 1 MALLEIRNLTRRFGDNT-VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQ 59 Query: 61 LFIGGKRVNEVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 + + G + VP QR V VFQ+YALFPHMTV N++F L +A PKAEI++KV EA Sbjct: 60 ILLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALE 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 ++L R P ELSGGQRQRV+I RA+V RP + L DEPLS LDA LR Q +IE+ L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 181 HRQFAQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 ++ + +YVTHDQ EA+ L+ RI +++ G + Q+ P +Y +PR+RFVA Sbjct: 180 QKEVG-ITFIYVTHDQAEALALSHRIAVMNK-------GQVEQLDEPTRIYSYPRSRFVA 231 Query: 241 GFIGSPRMNFLPVQVVSVQEQGILVRLSSSEETVLVAAQGQVQP--------GQSLTLGV 292 FIG+ + G++ ++ + + V G V+ G T+ + Sbjct: 232 DFIGTCNLF-----------DGVVTQIDGNMMWLDVPGMGAVKAFTAPSVTVGSKGTIAL 280 Query: 293 RPEHMEIGTQGQYGLNREVMLVERLGEQTY-----VHLDEPAGQPLVAKAAGDARIARGE 347 RPE ++ + G+ E + E Y V++ E G + ++ I R Sbjct: 281 RPEKTQVSAEIVRGVPDENHFDGYVKELLYMGGVTVYIVETEGGVRIETMLANSAIGRPR 340 Query: 348 RLRVSVAPNCAYLFD 362 V A + A+ D Sbjct: 341 FFEVGDAVDVAWRVD 355 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 196 bits (498), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 165/286 (57%), Gaps = 13/286 (4%) Query: 3 SISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLF 62 SI ++ QK +G+ + NV LD E LGPSGCGK+TLLR IAGLE G + Sbjct: 2 SIEVKNIQKQFGNFV-ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 63 IGGKRVNEVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTL----AKLPKAEIEQKVREA 118 + G+ + +R V VFQ YALF HMTV+EN++FGL + + +++I++KV + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKL 120 Query: 119 ARILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIA 178 ++QL+ L R P +LSGGQRQR+A+ RA+ P V L DEP LDA +R + R + Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 179 RLHRQFAQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRF 238 RLH S ++VTHDQ EA+ +AD+IVL++ G++ Q+G P ++Y++P + F Sbjct: 181 RLHDDLHVTS-IFVTHDQEEALEVADQIVLMNK-------GNVEQIGAPKDVYNNPASPF 232 Query: 239 VAGFIGSPRMNFLPVQVVSVQEQGILVRLSSSEETVLVAAQGQVQP 284 V GF+G+ + V +Q GI ET G V+P Sbjct: 233 VYGFLGNVNLFHGRVHEGILQSSGIAFEAPEHAETQDTKGIGYVRP 278 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 167 bits (423), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 180/342 (52%), Gaps = 30/342 (8%) Query: 19 VIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVNE-----VPS 73 ++ ++ + E LG SGCGK+T+LR+IAG E L +G + +GGK ++ VP Sbjct: 29 IVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPE 88 Query: 74 AQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQRKPK 133 A R V +VFQ YALFPH++V +N+ FGL KL AE ++ + ++ L+ ++ P Sbjct: 89 A-RHVGVVFQDYALFPHLSVSDNIGFGLR--KLAAAERNGRINKLLALVGLQAQEKKFPH 145 Query: 134 ELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFAQASVVYVT 193 ELSGGQ+QRVA+ RA+ +P + L DEP SNLD LR + E+ + ++ +V+ VT Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVL-VT 204 Query: 194 HDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVAGFIGSPRMNFLPV 253 HDQ EA +AD+I ++ G I Q LYH P NRFVA FIG F+P Sbjct: 205 HDQHEAFAIADQIGVMQDGV-------IVQWDQAYNLYHRPANRFVADFIGLGV--FVP- 254 Query: 254 QVVSVQEQGILVRLSSSEETVLVAAQG----QVQPGQSLTLGVRPEHMEIGTQGQYGLNR 309 V Q Q + + L + L QG +V ++ + +R + ++ L Sbjct: 255 GTVDKQRQDVAIELGT-----LPLCQGLPVCEVDDQNAVDVLLRAD--DVIHDDNSPLKA 307 Query: 310 EVMLVERLGEQTYVHLDEPAGQPLVAKAAGDARIARGERLRV 351 EV+ G + L P+GQ L+A A GER+ + Sbjct: 308 EVIRKAFRGAEFLYTLKLPSGQQLLALVPSHHDHALGERIGI 349 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 7/215 (3%) Query: 1 MASISLRAAQKAY---GDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLT 57 + +I ++ K + G +R V+L I + EF +G SGCGKSTLLR +AG E + Sbjct: 11 LPAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 58 SGDLFIGGKRVNEVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVRE 117 SG + G ++ PS +R MVFQ Y LFP +TV EN+ FG LPKA++E+ Sbjct: 71 SGSANMYGMPIDG-PSPER--GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 118 AARILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEI 177 ++ L + P +LSGG +QRVAI R + V L DEP LDA R + + ++ Sbjct: 128 YTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDL 187 Query: 178 ARLHRQFAQASVVYVTHDQVEAMTLADRIVLLHAG 212 + + + +VV+VTH EA+ L+DR+V++ AG Sbjct: 188 LEIWER-TKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 7/196 (3%) Query: 20 IRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVNEVPSAQRSVA 79 + NV+L + + EF +G SGCGKSTLL IAGL T G L G + + PS +R+V Sbjct: 28 LTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAG-PSPERAV- 85 Query: 80 MVFQSYALFPHMTVYENMSFGLT---LAKLPKAEIEQKVREAARILQLEELLQRKPKELS 136 VFQ+++L P +T YEN+ + A KAE++ + R A ++ L Q++P E+S Sbjct: 86 -VFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNEIS 144 Query: 137 GGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFAQASVVYVTHDQ 196 GG +QRV I RA+ P V L DEP LDA R+ + E+ ++ ++VV VTHD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKI-VAATGSTVVMVTHDV 203 Query: 197 VEAMTLADRIVLLHAG 212 EA+ L+DRIV+L G Sbjct: 204 DEAVLLSDRIVMLTNG 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 835,821 Number of extensions: 33917 Number of successful extensions: 314 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 64 Length of query: 381 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 296 Effective length of database: 906,776 Effective search space: 268405696 Effective search space used: 268405696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)