BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0254.p (490 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-li... 212 4e-56 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 136 2e-33 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 127 2e-30 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 124 2e-29 gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein... 104 1e-23 >gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 530 Score = 212 bits (540), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 249/491 (50%), Gaps = 39/491 (7%) Query: 23 GCALGPSGEAPAMPQPAHYAVESTPATLGPQEAR----QKFVLGQRAVPQWWQAYGSPQL 78 GCA+GP + P + ++ P Q+FVL Q WW+ + SPQL Sbjct: 20 GCAVGPDYKRPELTPSKAFSPTPLPTATTTAPVSGGNAQRFVLTQDIQADWWKLFRSPQL 79 Query: 79 SAWVDEALRNNHSLAQAERNLAGAQLQLRAQVGESLWPTIDAVGQT-QRQRALGLPNIGP 137 +A +++A N ++ A+ L AQ + AQ G +PT+ +VG T R + G N+G Sbjct: 80 NALIEKAFAANPTIESAQAALRVAQENVYAQQG-FFFPTV-SVGYTPARTKIAG--NLGG 135 Query: 138 STN-----------------------------VYNVFSGQIRASYTFDLFGVQRFANSAL 168 ++ +YN + Q+ +T D+FG R L Sbjct: 136 NSPGVQGNGTVISTVANPSAAEGGKAPFNAPVIYNFHTTQLTVGFTPDVFGANRRQVETL 195 Query: 169 AAQVDAQSYQFDAARRTVAANVVISAINAASLRAQVAQTERLVALADADVEEMQRRLALG 228 AQ Q Q +AA T+A+NV +AI A LR Q++ + ++A + VE ++R+ G Sbjct: 196 EAQAKYQQLQLEAAYITLASNVTAAAIQEALLREQISIVQSIIASNEKSVEIVERQFKAG 255 Query: 229 AVSTDELLSARASAQSLRASLPGLKAQWQGARHALAVLMGRTPDAAPPD-LDIAALTLPA 287 S +L + + + LP L+ Q++ R+ L L G D+ P+ D+A+L LP Sbjct: 256 YASRLDLSLQQTTLLQAKEQLPPLQKQFEQTRNLLRALAGGMQDSDLPESFDLASLQLPE 315 Query: 288 EVPMTVPSDLLRQRPDILAADAALKVAAAQQAEATAEMFPSLSINASFGQSGFSWAKATS 347 ++P+++PS L+ QRPD+ AA+ L A+AQ A A P SI+ ++G + +++ Sbjct: 316 DLPLSLPSQLIDQRPDVRAAEEQLHAASAQIGVALANRLPQFSIDGTWGGAASKFSQMFW 375 Query: 348 GVGAVWGLGASLTQPLFHGGALRAKRDAAKEAYLAAQSHYRQTVLNAFQNVADSLVALTQ 407 G + L A+++ PL GG LR ++ AA+E+Y A + Y++TV+ AFQNVAD+L A+ Sbjct: 376 NSGRFFELAANISMPLLDGGVLRHRQRAAEESYKQAAAQYKETVITAFQNVADTLHAIHA 435 Query: 408 DADALQASAAARTASEQSWRNAQRRAQLGAYPASATRAGERQYLNARLGEIRATASRMSD 467 DA+AL+ASA ++ + Q++ G E+ Y A L +A A R+ D Sbjct: 436 DAEALKASAELADTAKTTLTLTQKQHARGYIDRVVLINAEQGYRQAALNVAQARAMRLGD 495 Query: 468 TATLFQAMGVG 478 TA LFQA+G G Sbjct: 496 TAALFQALGGG 506 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 135/482 (28%), Positives = 218/482 (45%), Gaps = 21/482 (4%) Query: 9 TPRPLALAVALLLSGCALGPSGEAPAMPQPAHYAVESTPATLGPQEARQKFVLGQRAVPQ 68 TP +L L+L GCA+GP + P P + E+ P++ K Sbjct: 6 TPAFASLLALLILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELK--------GA 57 Query: 69 WWQAYGSPQLSAWVDEALRNNHSL--AQAERNLAGAQLQLRAQVGESLWPTI-----DAV 121 WW+ + +L+A ++AL+N ++ AQA + A AQ + S +P I A Sbjct: 58 WWEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANV---ANSSFFPKIGAQAGSAR 114 Query: 122 GQTQRQRALGLPNIGPSTNVYNVFSGQIRASYTFDLFGVQRFANSALAAQVDAQSYQFDA 181 +T +R L N S+ V N F+ SY DLFG R A F+ Sbjct: 115 NRTSAERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFEN 174 Query: 182 ARRTVAANVVISAINAASLRAQVAQTERLVALADADVEEMQRRLALGAVSTDELLSARAS 241 R + A + + A++ ++ + ++ + R LGA S +L + Sbjct: 175 TRLVLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGL 234 Query: 242 AQSLRASLPGLKAQWQGARHALAVLMGR-TPDAAPPDLDIAALTLPAEVPMTVPSDLLRQ 300 + + L L+ Q ++A+A L+G PD P +++A T PA +P+T P+ LL + Sbjct: 235 TAATQTQLTLLQDQRARYQNAIATLVGVPAPDFKLP-VNLAVTTAPA-IPLTAPAALLER 292 Query: 301 RPDILAADAALKVAAAQQAEATAEMFPSLSINASFGQSGFSWAKATSGVGAVWGLGASLT 360 RPDI AA+ A+ A AQ A + FPSL ++ +G + S +W +G S T Sbjct: 293 RPDIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSAT 352 Query: 361 QPLFHGGALRAKRDAAKEAYLAAQSHYRQTVLNAFQNVADSLVALTQDADALQASAAART 420 Q +F GG A D AK Y A +YRQ+VL A Q V D L + A AL ++ A Sbjct: 353 QMIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAAD 412 Query: 421 ASEQSWRNAQRRAQLGAYPASATRAGERQYLNARLGEIRATASRMSDTATLFQAMGVGLE 480 ++++S + R Q G ++ +L+ + E++ R+ +T L +A+G G Sbjct: 413 SADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWH 472 Query: 481 AQ 482 A Sbjct: 473 AH 474 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 142/489 (29%), Positives = 221/489 (45%), Gaps = 49/489 (10%) Query: 15 LAVALLLSGCALGPSGEAPAMPQPAHYAVESTPATLGPQEARQKFVLGQRAVPQ----WW 70 + AL+L+GC+ E + P Y +ST + E + L A + WW Sbjct: 11 MVAALVLAGCSTARPPEELKLDLPNAYREQST---VKANELDGAWKLAAPADNKDRGAWW 67 Query: 71 QAYGSPQLSAWVDEALRNNHSLAQAERNLAGAQLQLRAQVGESLWPTIDAVGQTQRQRAL 130 + +G QLS + EA +N +LA A LA R + ++ +DA Q + Sbjct: 68 KVFGDEQLSNLIVEAGNSNLNLAIA---LA------RVKDARAIAGVVDADRGVQVDAGV 118 Query: 131 GLPNIGPSTNVYNVFSGQIRASYTFDLFGVQRFANSALAAQVDAQSYQFDAARRTVA--- 187 G G + + + +Y DLFG R ++++ AA++DA+ + AA R+V Sbjct: 119 GPTRSGNAQGASTQYRAPLSFAYEVDLFG--RLSDASRAARLDAEGQE--AAYRSVLLAL 174 Query: 188 -ANVVISAINAASLRAQVAQTERLVALADADVEEMQRRLALGAVSTDELLSARASAQSLR 246 ++V SL ++V E+ VAL ++ QRR G S ++ A+ + Sbjct: 175 QSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTS 234 Query: 247 ASLPGLKAQWQGARHALAVLMGRTPDAAPPDLDIAALTLPA--------EVPMTVPSDLL 298 A L G+K Q HALA+L+G+ P A TLP VP +PSDLL Sbjct: 235 AELEGVKRQRAQRDHALAILLGKAP---------AEFTLPVAPLAAAVVTVPSGLPSDLL 285 Query: 299 RQRPDILAADAALKVAAAQQAEATAEMFPSLSINASFGQSG------FSWAKATSGVGAV 352 +RPDI A L ++A+ A A FP L + S G F W+ + +G V Sbjct: 286 ERRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPV 345 Query: 353 WGLGASLTQPLFHGGALRAKRDAAKEAYLAAQSHYRQTVLNAFQNVADSLVALTQDADAL 412 +G L+ PLF GG ++ A Y A ++YR VL FQ+V D+L AL L Sbjct: 346 --VGTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQL 403 Query: 413 QASAAARTASEQSWRNAQRRAQLGAYPASATRAGERQYLNARLGEIRATASRMSDTATLF 472 Q A +++ + R A R + G+ +R L+++ +IR+T R + L Sbjct: 404 QFEEQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLI 463 Query: 473 QAMGVGLEA 481 +A+G G EA Sbjct: 464 RALGGGWEA 472 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 130/473 (27%), Positives = 219/473 (46%), Gaps = 22/473 (4%) Query: 13 LALAVALLLSGCALGPSGEAPAMPQPAHYAVESTPATLGPQEARQKFVLGQRAVPQWWQA 72 LAL A +LS C++ P P P A Y V P +A V RAV W+ Sbjct: 6 LALLAAGVLSACSMAPKYVRPDAPVAADYGV--------PSKADNNQV---RAVDIGWRN 54 Query: 73 YGS-PQLSAWVDEALRNNHSLAQAERNLAGAQLQLRAQVGESLWPTIDAVGQTQRQRA-L 130 + + P+L + A+ NN L A + A+ Q + L PT++ R R Sbjct: 55 FFTDPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSAD-LLPTLNVNATGSRARVPA 113 Query: 131 GLPNIGPSTNVYNVFSGQIRASYTFDLFG-VQRFANSALAAQVDAQSYQFDAARRTVAAN 189 + N G S N G A++ D FG V+ +++ALAA + + Q AA+ ++ + Sbjct: 114 SISNTGSSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQ-RAAQISLVSE 172 Query: 190 VVISAINAASLRAQVAQTERLVALADADVEEMQ---RRLALGAVSTDELLSARASAQSLR 246 V + + S R+ Q + ++ VE + +R +GA S +L + A Q+ R Sbjct: 173 VAKAYL---SERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTAR 229 Query: 247 ASLPGLKAQWQGARHALAVLMGRTPDAAPPDLDIAALTLPAEVPMTVPSDLLRQRPDILA 306 A+ + Q A +AL +L+G+ PP +++ T+ ++P +PSDLL QRPDI + Sbjct: 230 AAELLAQRQRAQAMNALTLLVGQPLTDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRS 289 Query: 307 ADAALKVAAAQQAEATAEMFPSLSINASFGQSGFSWAKATSGVGAVWGLGASLTQPLFHG 366 A+ L A A A A FP +S+ A G S A G W L P+F Sbjct: 290 AEQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDA 349 Query: 367 GALRAKRDAAKEAYLAAQSHYRQTVLNAFQNVADSLVALTQDADALQASAAARTASEQSW 426 G R + A+ A ++Y +++ AF+ V+D+LVA ++A + A + + Sbjct: 350 GRNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERF 409 Query: 427 RNAQRRAQLGAYPASATRAGERQYLNARLGEIRATASRMSDTATLFQAMGVGL 479 + A +R Q G + +R+ A+L ++ +R+++ L++++G GL Sbjct: 410 KFATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGL 462 >gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein [Janthinobacterium sp. Marseille] Length = 498 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/355 (29%), Positives = 164/355 (46%), Gaps = 34/355 (9%) Query: 68 QWWQAYGSPQLSAWVDEALRNNHSLAQAERNLAGAQLQLRAQVGES-LWPTIDAVGQTQR 126 QWW AYG QL A + AL ++ +L AE + Q Q A + ES P + A R Sbjct: 59 QWWHAYGDAQLDALIATALSDSPNLHIAEARVR--QAQAYAGMAESATLPNVSASTSMTR 116 Query: 127 QRALGLPNIGP----STNVYNVFSGQIRASYTFDLFGVQRFANSALAAQVDAQSYQFDAA 182 Q I P + YN + + A+Y DL+G R +A +V S + A Sbjct: 117 QLFSAHDFIPPPEAGNYAWYNRVA--VEATYDLDLWGRHRQELAAALDEVKVSSAESQMA 174 Query: 183 RRTVAANVVISAINAASLRAQVAQTERLVALADADVEEMQRRLALGAVSTDELLSARASA 242 R + N+V S + + A TE +A + ++ M++RLA G L+ Sbjct: 175 RLALENNIVRSYVQLSLQFALKDITEDTLAHREKGLQVMRKRLAAG-------LATEMDV 227 Query: 243 QSLRASLPGLKAQWQGA-------RHALAVLMGRTP----DAAPPDLDI---AALTLPAE 288 L A++P L Q + R+ LA L G+ P P L + A L LPA Sbjct: 228 TQLEAAIPPLHIQIEQYDEAIIVLRNQLAALAGKGPAEGEKITRPTLALDNNAWLRLPA- 286 Query: 289 VPMTVPSDLLRQRPDILAADAALKVAAAQQAEATAEMFPSLSINASFGQSGFSWAKATSG 348 +P+DL+ +RPD+ A ++ A Q A A +P +++ A G G ++ G Sbjct: 287 ---VLPADLIGRRPDVAARRWGVEAAGKQIEAAKAAFYPDINLMAFIGFQGIGFSNFLKG 343 Query: 349 VGAVWGLGASLTQPLFHGGALRAKRDAAKEAYLAAQSHYRQTVLNAFQNVADSLV 403 ++ G+G +++ P+F GG LR+ A AY A Y T+++A ++VA++LV Sbjct: 344 DSSIRGVGPAISLPIFDGGRLRSNLGAHTAAYDIAVESYNGTLIHALESVANTLV 398 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.125 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 866,370 Number of extensions: 29835 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 12 Length of query: 490 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 403 Effective length of database: 899,382 Effective search space: 362450946 Effective search space used: 362450946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)