BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0252.p (395 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983075|ref|YP_001352714.1| component of multidrug efflux s... 147 2e-36 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 119 2e-28 gi|152982473|ref|YP_001351741.1| membrane fusion protein [Janthi... 80 2e-16 gi|152981890|ref|YP_001351977.1| cation efflux system protein [J... 72 4e-14 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 72 6e-14 >gi|152983075|ref|YP_001352714.1| component of multidrug efflux system [Janthinobacterium sp. Marseille] Length = 367 Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 189/363 (52%), Gaps = 21/363 (5%) Query: 34 LALLTVSFALLLSACSKPAPVAEAPREVVVLQA---QERGGSLPLQLPAEVQSRYVTSLS 90 LA+L++S L C KP E +V A G S V +R ++L Sbjct: 14 LAILSLS----LPGCGKPVEKTEPLAKVAYFNAIAATSNGASYT----GVVHARTESNLG 65 Query: 91 FRVAGQLVERRVHLGDVVRRGQVLARLDPADAD--QNAVSARAELASARQHLEAAEKQLQ 148 FR++G++++R V GD V+ GQ L ++DP D + +NA A + A AR L+A+ +L Sbjct: 66 FRISGKILQRFVDPGDSVKVGQPLMKIDPVDYELAKNASRALVQAAKAR-DLQASSDEL- 123 Query: 149 RDTEQAREQLISTQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTTLVAQHDGVISAE 208 R + +S Q EQ + A +A +Q +AAQ+++ NQ DYT L A GV+ Sbjct: 124 RLRKLLETGAVSKQAYEQVKAAADSAAAQLEAAQSQSKQTENQADYTILRADVKGVVMDV 183 Query: 209 QANTGDVLSAGQPVYALAWSGAMDVVTDVADRQLASLQPGAAATVTLAALPGKHFQARVR 268 G ++SAGQ V LA SG + V + ++ L L P AA+ +L + +F A++R Sbjct: 184 PVEPGQIVSAGQTVVKLAKSGPREAVVSIPEQAL-KLLP-RAASASLYSDSKTNFAAKLR 241 Query: 269 EISPAADPQSRTYRVKLTLEQPEPGVRLGMIGEVAITPHSDANAGQVMLL-PATALFHQG 327 E+S ADP +RTY+ K L LG V I D+N+ +++ P +AL +G Sbjct: 242 ELSSVADPLTRTYQAKYALAGEGDQAPLG--ATVTIHTTGDSNSSNMLIASPVSALVDKG 299 Query: 328 GKPAVWIVG-VEGKLELRPVIIAAYGERSIALSQGVTANDKVVVQGVHTLTVGEKVKPVA 386 P+VW++ + LR V +A+ GE + ++ G+ +++V G H L G+KV+ +A Sbjct: 300 DGPSVWVIDKANSTVSLRKVKVASLGEEVVGIASGIATGERIVAFGSHLLKQGQKVELLA 359 Query: 387 PLH 389 P+ Sbjct: 360 PIK 362 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 5/335 (1%) Query: 56 EAPREVVVLQAQERGGSLPLQLPAEVQSRYVTSLSFRVAGQLVERRVHLGDVVRRGQVLA 115 +A R V V + L+LP +Q ++ R G + +GD V+RG +LA Sbjct: 68 QATRYVSVTSPRSSATDNVLRLPGTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLA 127 Query: 116 RLDPADADQNAVSARAELASARQHLEAAEKQLQRDTEQAREQLISTQQLEQSQDAHAAAL 175 +D + Q A+A A A +L+ A+ +R + +S Q L++ ++A A A+ Sbjct: 128 VIDTPEVAQQLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAV 187 Query: 176 SQFKAAQARAAVAGNQRDYTTLVAQHDGVISAEQANTGDVLSAG---QPVYALAWSGAMD 232 + +++A +Q Y+ +VA DG+++ + G ++ +G + ++ LA S + Sbjct: 188 AADNSSKATVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLR 247 Query: 233 VVTDVADRQLASLQPGAAATVTLAALPGKHFQARVREISPAADPQSRTYRVKLTLEQPEP 292 V V ++ G +TL +PGK F ++ + A D +RT +V + L P+ Sbjct: 248 VYVYVPQSYSTQIKAGNTVGITLNEIPGKVFDGKIARTAGAIDTVTRTLQVAIDLPNPDG 307 Query: 293 GVRLGMIGEVAITPHSDANAGQVMLLPATALFHQGGKPAVWIVGVEGKLELRPVIIAAYG 352 + G +VAI + + + +P L + P V +VG +GK+ L+PV+IA Sbjct: 308 VLLPGAYAQVAI--KASGGSASSLTIPNNTLLFRPEGPRVAVVGDDGKVRLQPVVIAREL 365 Query: 353 ERSIALSQGVTANDKVVVQGVHTLTVGEKVKPVAP 387 I L+ GVTA DK+++ +L+ G+ V + P Sbjct: 366 GVDIELASGVTAQDKLIINPADSLSNGDAVSVITP 400 >gi|152982473|ref|YP_001351741.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 394 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 152/338 (44%), Gaps = 30/338 (8%) Query: 63 VLQAQERGGSLPLQLPAEVQSRYVTSLSFRVAG------QLVERRVHLGDVVRRGQVLAR 116 V AQ SLP+ + A + VT+ + G QL E R ++GDVV+RGQVLA Sbjct: 47 VTTAQPSQASLPIYMTA---NGTVTAWQEAIIGSESNGLQLTEVRANVGDVVKRGQVLAT 103 Query: 117 LDPADADQNAVSARAELASARQHLEAAEKQLQRDTEQAREQLISTQQLEQSQDAHAAALS 176 A + ARA + A + A+ +R +STQQ+ Q A + Sbjct: 104 FSVASVRADVAQARASVMEAEANAADAKNNAERARTLEATGALSTQQINQYLTTEQTAKA 163 Query: 177 QFKAAQARAAVAGNQRDYTTLVAQHDGVISAEQANTGDVLSAGQPVYALAWSGAMDVVTD 236 + +AA+A AV + T ++A DGVISA A G V+SAG ++ L G ++ + Sbjct: 164 KAEAARAVLAVQEVRLSQTQVLASDDGVISARSATVGAVVSAGTELFRLIRQGRLEWRAE 223 Query: 237 VADRQLASLQPGAAATVTLAALPGKHFQARVREISPAADPQSRTYRVKLTLEQPEPG--- 293 V +L L+ G +A +T A G + +VR I+P D Q+R V + L P Sbjct: 224 VISSELGQLKTGTSALIT--AANGTQVKGKVRMIAPTVDAQNRMALVYVDLAPVAPNTAP 281 Query: 294 VRLGMIGEVAITPHSDANAGQVMLLPATALFHQGGKPAVWIVGVEGK---LELRPVIIAA 350 VR GM T D + +P A+ + G V+ + + + L+++P Sbjct: 282 VRAGMFA----TGQFDLGNSSAVTVPQQAIVIRDGFSYVFRMNADNRVSQLKVQP----- 332 Query: 351 YGER---SIALSQGVTANDKVVVQGVHTLTVGEKVKPV 385 G R I + GV + +V G L G+ VK V Sbjct: 333 -GRRLADRIEIISGVPVDAVLVANGAGFLNDGDLVKVV 369 >gi|152981890|ref|YP_001351977.1| cation efflux system protein [Janthinobacterium sp. Marseille] Length = 389 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/293 (21%), Positives = 136/293 (46%), Gaps = 19/293 (6%) Query: 89 LSFRVAGQLVERRVHLGDVVRRGQVLARLDPADADQNAVSARAELASARQHLEAAEKQLQ 148 + ++G++V + GDVV+ GQVLA +D D +A A++ A+ L+ + + Sbjct: 92 IGVSISGRIVALKAAPGDVVKAGQVLAEIDSPDVG----TAYADINKAKADLDHKRRVYE 147 Query: 149 RDTEQAREQLISTQQLEQSQDAHAAALSQFKAAQAR-------AAVAGNQRDYTTLVAQH 201 R + + I+ + +E +Q + A ++ A+ R V QR +L++ Sbjct: 148 RAKDLGEGEAIAAKDVENAQADYVQAQAETARAELRLKNLNPNGMVIRGQR--ISLLSPM 205 Query: 202 DGVISAEQANTGDVLSAG--QPVYALAWSGAMDVVTDVADRQLASLQPGAAATVTLAALP 259 +GV++ A +S G P++ + + ++ DV ++ L+ ++ G+ + A P Sbjct: 206 NGVVTERTATPALEVSPGMSSPLFVVTNPKQLWLMIDVPEKMLSQIKLGSTVAIESDAYP 265 Query: 260 GKHFQARVREISPAADPQSRTYRVKLTLEQPEPGVRLGMIGEVAITPHSDANAGQVMLLP 319 + F A++ ++ A DP SR ++ L P+ ++ E+ + ++G + +P Sbjct: 266 NEKFTAKIVQLGQAVDPNSRRITIRARLNNPDG----KLLPEMFVRALVQQDSGTGVAVP 321 Query: 320 ATALFHQGGKPAVWIVGVEGKLELRPVIIAAYGERSIALSQGVTANDKVVVQG 372 AL +G V++ G+ + R V + G + +G+ + +V +G Sbjct: 322 NGALVTRGIYSFVFVQTAPGEFQQRKVKLLTRGSSVSYVGEGLKGGESIVTKG 374 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 157/372 (42%), Gaps = 26/372 (6%) Query: 36 LLTVSFALLL----SACSKPAPVAEAP--REVVVLQAQERGGSLPLQLPAEVQSRYVTSL 89 L +S AL L + C + A AP +EV V+ Q + +LP ++S V + Sbjct: 7 LTRLSAALFLIYAIAGCGAKSDQAAAPPPQEVSVVTVQPGVLGVTNELPGRMESIRVAEV 66 Query: 90 SFRVAGQLVERRVHLGDVVRRGQVLARLDPADADQNAVSARAELASARQHLEAAEKQLQR 149 RV G +++R G V+ G +L ++DPA SA A +A L AE++ +R Sbjct: 67 RARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQKAKR 126 Query: 150 DTEQAREQLISTQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTTLVAQHDGVISAEQ 209 +S Q+ + A A++ +A+A A Y ++ + G I Sbjct: 127 YKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRIGRAL 186 Query: 210 ANTGDVLSAGQ-----------PVYALAWSGAMDVVT---DVADRQLASLQPGAAATVTL 255 G ++ G P+Y A +V+ + + +L S GAA VTL Sbjct: 187 VTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAA-KVTL 245 Query: 256 AALPGKHFQARVREISPAADPQSRTYRVKLTLEQPEP-GVRL-GMIGEVAITPHSDANAG 313 G+ + + + + V L E P P G+ L GM I D NA Sbjct: 246 VTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDENA- 304 Query: 314 QVMLLPATALFHQGGKPAVWIVGVEGKLELRPVIIAAYGERSIALSQGVTANDKVVVQGV 373 + +P A+ G AV +VG +GK+ RPV + + ++ G+ D+V+V+G+ Sbjct: 305 --ITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIVEGL 362 Query: 374 HTLTVGEKVKPV 385 + G VKPV Sbjct: 363 QKVQPGATVKPV 374 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 756,318 Number of extensions: 28768 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 16 Length of query: 395 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 310 Effective length of database: 906,776 Effective search space: 281100560 Effective search space used: 281100560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)