BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0250.p
         (383 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate depo...    91   1e-19

>gi|152981170|ref|YP_001352408.1| Poly-beta-hydroxyalkanoate
           depolymerase [Janthinobacterium sp. Marseille]
          Length = 411

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 137/323 (42%), Gaps = 32/323 (9%)

Query: 76  RTLTLREYGKPAAVPTLVVAPYAGHSSVIADYYHGQSLVETLMAHGVSH-VCLTDWHSAS 134
           + ++ + Y        L+VAP +GH        H   L +T+ +  V H V +TDW  A 
Sbjct: 94  KDMSAKAYAALKQPTILLVAPLSGH--------HATLLRDTVRSLLVEHDVYITDWRDAR 145

Query: 135 E---DMKDLEIDNYLADLCVVIQELGGRVNLVGLCQG-----GWISAMIAARFPPMVQRL 186
                     + +Y+  +   I++LG  ++++ +CQ        IS M + R P + + +
Sbjct: 146 MVPLTEGPFHLHDYIYYIQDFIRQLGPNLHVISVCQPTVPVLAAISLMASERDPHLPKSM 205

Query: 187 VLAGSPIDAGAGDGPLKQMVERTPIRFYEDLV---------RTGGGLMRGSFMLQGWKNM 237
            + G PID       +  +    P  ++E+ V           G  +  G     G+  M
Sbjct: 206 TMMGGPIDPRKSPTQVNNLATEKPYSWFENQVIHSVPASYPGFGRKVYPGFLQHAGFIAM 265

Query: 238 HPDEHYFTEHLDLFQHID--DPVYLAKRETFSAWYETTVDLPGRWYLQAIRNIFKDNLLA 295
           +P  H    H D + H+   D     +   F   Y   +D+P  +YL+ I+ +F+++ L 
Sbjct: 266 NPGRHA-QSHWDFYMHLREGDNESAEEHRKFYDEYNAVLDMPAEYYLETIKTVFQEHRLP 324

Query: 296 RGKYVALGKQLDLKDIH-CPLYLLAGERDDITTAEQVMNAATLMGTPATHITQRVVP--G 352
            G +   GK +  +DI    L+ + GERDDI+   Q   A  L  + A    Q+      
Sbjct: 325 LGTWEVEGKLVKPQDIKSVALFTIEGERDDISGLGQTHAAQDLCSSIAKSNKQQFTAPQC 384

Query: 353 GHIGLFMGSRTLAETWPQIAQWL 375
           GH G+F G +      P+I  ++
Sbjct: 385 GHYGIFSGRKWREIICPKITDFI 407


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 927,414
Number of extensions: 39393
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 298
Effective length of database: 906,776
Effective search space: 270219248
Effective search space used: 270219248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)