BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0247.p (672 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 261 8e-71 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 257 2e-69 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 255 6e-69 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 246 3e-66 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 245 5e-66 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 261 bits (668), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 160/455 (35%), Positives = 255/455 (56%), Gaps = 17/455 (3%) Query: 222 LKNQATAANQALELAHQDLHRFAQRMQYQAEHDLLTGLLGRAGFMEVAPRMV---ARQEH 278 L +Q ++L LA+Q+L + QA D LT L R + +MV R++ Sbjct: 241 LDSQTGKLVRSLALANQELTK-------QALQDNLTKLPNRTLLEDRLDQMVHKAVREQS 293 Query: 279 ALCMMFLDLDGFKVINDAYGHEAGDQVLIEVARRLHDCIPAEATLARLGGDEFVVLYALA 338 +MF+DLDGFK IND+ GH GD +LI+VA+R+ D I A+ T ARLGGDEFV+L + Sbjct: 294 RFALMFIDLDGFKAINDSLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEV- 352 Query: 339 PNAELPEHLARRLIDAVRQPFARLAHRHIGLS--LGITVTRSEDI--NEMLVCSDAAMYE 394 E +A +L + QPF +A ++G+S +GI V + +++L+ +DAAMY Sbjct: 353 NEPEDAASVADKLCTTLNQPF-DIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYH 411 Query: 395 AKRRGRNQFCLFNDSLNAHLQMKRDVERDLAHALTQRQLEVWFQPIVHHDGRTLDGFEAL 454 K GRN + F S+N + + V +DL AL +++ + +QP + + G EAL Sbjct: 412 TKSTGRNGYHFFEASMNINAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEAL 471 Query: 455 LRWHHPRHGDIAAPELIGIAALAGLSEELLRFIIGEVAEMIRFLQASTRSDLRVSMNISP 514 LRW HP G +A + I +A GL + +++ E +R ++++N+S Sbjct: 472 LRWQHPIRGIVAPADFISLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSS 531 Query: 515 REMERLCIEELVMATLKTYRVPAQMLEIEITEETAL-DLQAATQTLVSLSMQGVSIAIDD 573 + + E+V TL +PA L +E+TE TA+ +++A+ L L GV I+IDD Sbjct: 532 VQFSNDNLVEMVKETLARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDD 591 Query: 574 FGVGYSSLGFLRQMRVSRVKIDRSFVTGLAGQTENQALVAAMLQLSGSLGFQVVAEGVES 633 FG GYSSL +L+++ + +KIDR F+ LA +++ ++V+A++ L SL ++VAEGVE+ Sbjct: 592 FGTGYSSLLYLKRLPATELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVET 651 Query: 634 EQDLHTLQAMGCHAMQGYYFSPPMPARQACEMVKA 668 E+ L +GC +QGY+ PM + Q + A Sbjct: 652 EKQQEYLTTLGCDTLQGYFMGHPMASEQFMAAINA 686 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 257 bits (656), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 256/467 (54%), Gaps = 16/467 (3%) Query: 219 ASALKNQATAANQALELAHQDL---HRFAQRMQYQAEHDLLTGLLGRAGFMEVAPRMV-- 273 A LK + + L + +D+ R + M A D LT L R FM P+ + Sbjct: 430 AEWLKRKFVRSENGLAITLRDISEPKRHEREMSRLATEDGLTALPNRHWFMSYLPKALEN 489 Query: 274 ARQEHA-LCMMFLDLDGFKVINDAYGHEAGDQVLIEVARRLHDCIPAEATLARLGGDEFV 332 AR L ++F+DLD FK +ND GH AGDQ+L VA+RL + + R+GGDEF Sbjct: 490 ARANATMLAILFIDLDDFKNVNDTLGHSAGDQLLCTVAKRLRSVLRPSDKVIRIGGDEFT 549 Query: 333 VLYALAPNAELPEHLARRLIDAVRQPF-----ARLAHRHIGLSLGITV--TRSEDINEML 385 V+ + E H+A + A+R+PF IG S+GI++ +D+ ++ Sbjct: 550 VILEAIHSEEEAAHIAHAINQALREPFEISRDTTSQKNRIGGSIGISIFPRDGQDVETLV 609 Query: 386 VCSDAAMYEAKRRGRNQFCLFNDSLNAHLQMKRDVERDLAHALTQRQLEVWFQPIVHHDG 445 +D AMY AK + QF ++ +L ++M+ + E++L A+ + Q +++QP V Sbjct: 610 KNADIAMYAAKTGSKGQFRFYDHTLYEDIKMRLNTEQELQQAIKEDQFLIYYQPRVQTQT 669 Query: 446 RTLDGFEALLRWHHPRHGDIAAPELIGIAALAGLSEELLRFIIGEV-AEMIRFLQASTRS 504 L G EAL+RW HP G + + IG+A +GL + ++ +V A++ +L+ + Sbjct: 670 GKLLGIEALIRWQHPTRGLVLPNDFIGLAEESGLINPIGELVVDKVCAQLASWLKQGVEA 729 Query: 505 DLRVSMNISPREMERLCIEELVMATLKTYRVPAQMLEIEITEETAL-DLQAATQTLVSLS 563 + VS+N+SP + +++ + A+L + +PA +LEIE+TE + ++ L +++ Sbjct: 730 -VPVSVNVSPHQFNEGKVKKSIAASLAKHGIPASLLEIELTESAMMRNIGDIFDELTAIN 788 Query: 564 MQGVSIAIDDFGVGYSSLGFLRQMRVSRVKIDRSFVTGLAGQTENQALVAAMLQLSGSLG 623 G+ + +DDFG GYSSL L+++ + +KID++F + L + + A++ ++ +LG Sbjct: 789 AMGIKVHVDDFGTGYSSLSLLQRLDMDILKIDQAFTSQLGRGKDGEIFFTAIVSMAKALG 848 Query: 624 FQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPARQACEMVKAQG 670 +VVAEGVE+ + LH LQ + C +QGYY + P+PA ++++ Q Sbjct: 849 MRVVAEGVETLEQLHILQTLSCDEVQGYYVAWPLPADNIADIIRKQN 895 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 255 bits (652), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 150/437 (34%), Positives = 239/437 (54%), Gaps = 7/437 (1%) Query: 242 RFAQRMQYQAEHDLLTGLLGRAGFMEVAPRMVA---RQEHALCMMFLDLDGFKVINDAYG 298 R+ +++Q D LTGL R+ + + ++ R H + + F+DLD FK +ND G Sbjct: 510 RYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLG 569 Query: 299 HEAGDQVLIEVARRLHDCIPAEATLARLGGDEFVVLYALAPNAELPEHLARRLIDAVRQP 358 H+AGD +L +A RL + T++R+GGDEFV++ +A L + +R++D + QP Sbjct: 570 HQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQP 629 Query: 359 FARLAHRH-IGLSLGITVTRSEDIN--EMLVCSDAAMYEAKRRGRNQFCLFNDSLNAHLQ 415 H I S+G+ V ++ + E++ +D AMY AK GRN F + S+N Sbjct: 630 LTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERAL 689 Query: 416 MKRDVERDLAHALTQRQLEVWFQPIVHHDGRTLDGFEALLRWHHPRHGDIAAPELIGIAA 475 + +E DL +A+ + + + +QP + + G EAL+RW HP G I IG+A Sbjct: 690 ERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAE 749 Query: 476 LAGLSEELLRFIIGEVAEMIRFLQASTRSDLRVSMNISPREMERLCIEELVMATLKTYRV 535 GL + ++I E + Q LR+S+N+S R+ + + E + L+ ++ Sbjct: 750 ETGLIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQL 809 Query: 536 PAQMLEIEITEETAL-DLQAATQTLVSLSMQGVSIAIDDFGVGYSSLGFLRQMRVSRVKI 594 P Q LEIE+TE + D+ A L L GV ++IDDFG GYSSL +L++ + +KI Sbjct: 810 PPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKI 869 Query: 595 DRSFVTGLAGQTENQALVAAMLQLSGSLGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFS 654 DRSFV + ++ A+VA+++ L+ SL V+AEGVE+E+ L LQ C +QGY+FS Sbjct: 870 DRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFS 929 Query: 655 PPMPARQACEMVKAQGR 671 P+ A M+K R Sbjct: 930 RPITADAMEVMLKDDKR 946 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 246 bits (629), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/432 (37%), Positives = 238/432 (55%), Gaps = 13/432 (3%) Query: 250 QAEHDLLTGLLGRAGFMEVAPRMVARQEHA---LCMMFLDLDGFKVINDAYGHEAGDQVL 306 QA HD LTG+ R F E+A +AR + M FLDLD FK+IND GH GD +L Sbjct: 209 QASHDYLTGIPNRMLFYELAAAELARARRSRKLYGMFFLDLDKFKLINDTLGHAVGDLLL 268 Query: 307 IEVARRLHDCIPAEATLARLGGDEFVVLYALAPNAELPEHLARRLIDAVRQPFARLAHRH 366 VARRL + + LARLGGDEFV+L + + +A +L++ VR+PF L Sbjct: 269 QGVARRLRESLREYDLLARLGGDEFVMLISEMTSENDIAKVAAKLVEVVREPFPDLDGHD 328 Query: 367 IGLSLGITVT----RSEDINEMLVCSDAAMYEAKRRGRNQFCLFNDSLNAHLQMKRDVE- 421 I +S I + +++ +L +DAAMY AK G + F+ SLNA RDVE Sbjct: 329 IEISPSIGIALYPRDGQNVETLLTHADAAMYHAKAAGAGTYRFFDSSLNA--SSARDVEL 386 Query: 422 -RDLAHALTQRQLEVWFQPIVHHDGRTLDGFEALLRWHHPRHGDIAAPELIGIAALAGLS 480 A+ + + +QP V L G EAL+RW HP HG I + I +A L Sbjct: 387 LTRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAEENDLI 446 Query: 481 EELLRFIIGEVAEMIRFLQASTRSDLRVSMNISPREMERLCIEELVMATLKTYRVPAQML 540 L R++I I +A+ + V++N+SP++++ + E VM TL Y++ +L Sbjct: 447 VLLGRWVIDAACRQIADWRAAGLPLVPVAINVSPKQLKDSALLETVMETLARYQIEPGLL 506 Query: 541 EIEITEETAL-DLQAATQTLVSLSMQGVSIAIDDFGVGYSSLGFLRQMRVSRVKIDRSFV 599 EIEITE + D A + L L G+ IA+DD+G G+S L L+++ + +KIDRSFV Sbjct: 507 EIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKIDRSFV 566 Query: 600 TGLAGQTENQALVAAMLQLSGSLGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPA 659 + + +VA+ + L+ +LG QVVAEGVES++ L L+ GC +QG+YF P+ A Sbjct: 567 RDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFKRPVAA 626 Query: 660 RQACEMVKAQGR 671 E+++ +GR Sbjct: 627 AGIVEILR-RGR 637 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 245 bits (626), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 7/427 (1%) Query: 247 MQYQAEHDLLTGLLGRAGFMEVAPRMVARQEHA---LCMMFLDLDGFKVINDAYGHEAGD 303 +Q+QA HD LTGL R + + V E + FLDLD FK IND+ GH+ GD Sbjct: 271 IQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGD 330 Query: 304 QVLIEVARRLHDCIPAEATLARLGGDEFVVLYALAPNAELPEHLARRLIDAVRQPF-ARL 362 ++L A+RL C+ T+AR GGDEFV+L PN E H +R++ V QP+ A Sbjct: 331 ELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKAND 390 Query: 363 AHRHIGLSLGITVTRSE--DINEMLVCSDAAMYEAKRRGRNQFCLFNDSLNAHLQMKRDV 420 I S+G+T+ + D +L +D+AMY+AK GRN F F+ +N+ + + ++ Sbjct: 391 LEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLEL 450 Query: 421 ERDLAHALTQRQLEVWFQPIVHHDGRTLDGFEALLRWHHPRHGDIAAPELIGIAALAGLS 480 L A+T + +QP V + G EAL+RW+ G ++ I +A GL Sbjct: 451 LNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLI 510 Query: 481 EELLRFIIGEVAEMIRFLQASTRSDLRVSMNISPREMERLCIEELVMATLKTYRVPAQML 540 L +++ R Q + + +S+N+SPR++ R I E+V L + AQ L Sbjct: 511 IPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHL 570 Query: 541 EIEITEET-ALDLQAATQTLVSLSMQGVSIAIDDFGVGYSSLGFLRQMRVSRVKIDRSFV 599 E+EITE D++ + L L GV I++DDFG GYSSL +L++ V +KID+SFV Sbjct: 571 ELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFV 630 Query: 600 TGLAGQTENQALVAAMLQLSGSLGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPA 659 +A ++ A+V A++ L +L V+AEG+E+E L A GC QGY S P+P Sbjct: 631 RDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVPN 690 Query: 660 RQACEMV 666 + +++ Sbjct: 691 KNFVDLL 697 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,495,867 Number of extensions: 60617 Number of successful extensions: 337 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 34 Length of query: 672 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 582 Effective length of database: 888,291 Effective search space: 516985362 Effective search space used: 516985362 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)